miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10927 5' -58 NC_002794.1 + 95658 0.66 0.854771
Target:  5'- aUGGGCCagUGUcUGCUCGACGagGGCGu -3'
miRNA:   3'- gACCCGGg-GCA-ACGAGUUGUggUCGU- -5'
10927 5' -58 NC_002794.1 + 96908 0.68 0.751063
Target:  5'- gCUGGGgCUCG-UGCUgGGCGCCgucGGCGg -3'
miRNA:   3'- -GACCCgGGGCaACGAgUUGUGG---UCGU- -5'
10927 5' -58 NC_002794.1 + 103531 0.67 0.796865
Target:  5'- -gGGGCCCgGgcgggcgGCUCGGCgucaacgucgACCGGCu -3'
miRNA:   3'- gaCCCGGGgCaa-----CGAGUUG----------UGGUCGu -5'
10927 5' -58 NC_002794.1 + 110638 0.68 0.751063
Target:  5'- aCUcGGCCCCGcucgGCUCG--ACCAGCu -3'
miRNA:   3'- -GAcCCGGGGCaa--CGAGUugUGGUCGu -5'
10927 5' -58 NC_002794.1 + 110813 0.69 0.702745
Target:  5'- -cGGGCCCgc--GCUCGACgACCGGCc -3'
miRNA:   3'- gaCCCGGGgcaaCGAGUUG-UGGUCGu -5'
10927 5' -58 NC_002794.1 + 111974 0.7 0.62288
Target:  5'- --cGGCCCCGg-GCUCGGCGCCcgacgagcccGGCAc -3'
miRNA:   3'- gacCCGGGGCaaCGAGUUGUGG----------UCGU- -5'
10927 5' -58 NC_002794.1 + 116431 0.68 0.760459
Target:  5'- -aGGGCCCgGcgGCggcggCGGCgACCGGCGc -3'
miRNA:   3'- gaCCCGGGgCaaCGa----GUUG-UGGUCGU- -5'
10927 5' -58 NC_002794.1 + 127096 0.66 0.854771
Target:  5'- -cGGGCCgCCGggGCgccgGACGCCcGGCu -3'
miRNA:   3'- gaCCCGG-GGCaaCGag--UUGUGG-UCGu -5'
10927 5' -58 NC_002794.1 + 129328 0.69 0.692875
Target:  5'- -cGGGUCCgCGaaGgUCGGCGCCGGCGg -3'
miRNA:   3'- gaCCCGGG-GCaaCgAGUUGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 131452 0.66 0.84229
Target:  5'- -aGGGCCaCCGUcgucauccccaacgGCuUCAGCgccaACCAGCAa -3'
miRNA:   3'- gaCCCGG-GGCAa-------------CG-AGUUG----UGGUCGU- -5'
10927 5' -58 NC_002794.1 + 133064 0.66 0.862321
Target:  5'- -cGGGCCCCuaccuCUCcggcACGCCGGCGc -3'
miRNA:   3'- gaCCCGGGGcaac-GAGu---UGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 134765 0.66 0.839095
Target:  5'- --cGGCCCCG-UGCUCugggagaaagGGgACCAGCu -3'
miRNA:   3'- gacCCGGGGCaACGAG----------UUgUGGUCGu -5'
10927 5' -58 NC_002794.1 + 135229 0.69 0.722304
Target:  5'- -cGGGCggaCCCGgcGCcggCGGCGCCGGCc -3'
miRNA:   3'- gaCCCG---GGGCaaCGa--GUUGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 138459 0.66 0.876817
Target:  5'- --cGGCUCCGgcGCccgCGugGCCGGCGu -3'
miRNA:   3'- gacCCGGGGCaaCGa--GUugUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 138527 0.66 0.862321
Target:  5'- -cGcGUCCUGcugcagcUGCUCGACGCCAGCu -3'
miRNA:   3'- gaCcCGGGGCa------ACGAGUUGUGGUCGu -5'
10927 5' -58 NC_002794.1 + 140328 0.67 0.830982
Target:  5'- -gGcGGCCCCGUcgcccucccguuUGCUCuugccguacuGCACgGGCAg -3'
miRNA:   3'- gaC-CCGGGGCA------------ACGAGu---------UGUGgUCGU- -5'
10927 5' -58 NC_002794.1 + 143085 0.66 0.868946
Target:  5'- -cGGGCCgcgggaUCGUgacGCUCGagccgcucgucggACGCCGGCAg -3'
miRNA:   3'- gaCCCGG------GGCAa--CGAGU-------------UGUGGUCGU- -5'
10927 5' -58 NC_002794.1 + 146867 0.67 0.796865
Target:  5'- --aGGCCCCGUUcgaaGCUCucccGCGCCgcGGCGg -3'
miRNA:   3'- gacCCGGGGCAA----CGAGu---UGUGG--UCGU- -5'
10927 5' -58 NC_002794.1 + 147804 0.66 0.847027
Target:  5'- gCUGGGCa-CGgcGCUgAugGCCGGCc -3'
miRNA:   3'- -GACCCGggGCaaCGAgUugUGGUCGu -5'
10927 5' -58 NC_002794.1 + 151637 0.66 0.839095
Target:  5'- -cGGGCgCCGaggGCUCggUGCCgGGCGg -3'
miRNA:   3'- gaCCCGgGGCaa-CGAGuuGUGG-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.