Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10927 | 5' | -58 | NC_002794.1 | + | 69745 | 0.71 | 0.592829 |
Target: 5'- cCUGGGCgCCGc-GCUCGucuGCGCCGGUu -3' miRNA: 3'- -GACCCGgGGCaaCGAGU---UGUGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 156297 | 0.66 | 0.854771 |
Target: 5'- -cGGcGCCCUGUaccccgUGCUCAAgUACgAGCGg -3' miRNA: 3'- gaCC-CGGGGCA------ACGAGUU-GUGgUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 48712 | 0.66 | 0.847027 |
Target: 5'- --cGGCCCCGggGCcgCgAGgGCCAGCu -3' miRNA: 3'- gacCCGGGGCaaCGa-G-UUgUGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 134765 | 0.66 | 0.839095 |
Target: 5'- --cGGCCCCG-UGCUCugggagaaagGGgACCAGCu -3' miRNA: 3'- gacCCGGGGCaACGAG----------UUgUGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 131452 | 0.66 | 0.84229 |
Target: 5'- -aGGGCCaCCGUcgucauccccaacgGCuUCAGCgccaACCAGCAa -3' miRNA: 3'- gaCCCGG-GGCAa-------------CG-AGUUG----UGGUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 147804 | 0.66 | 0.847027 |
Target: 5'- gCUGGGCa-CGgcGCUgAugGCCGGCc -3' miRNA: 3'- -GACCCGggGCaaCGAgUugUGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 151637 | 0.66 | 0.839095 |
Target: 5'- -cGGGCgCCGaggGCUCggUGCCgGGCGg -3' miRNA: 3'- gaCCCGgGGCaa-CGAGuuGUGG-UCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 82337 | 0.66 | 0.839095 |
Target: 5'- -gGGaGCUCCGccgGCUCGGCgucGCCGGCc -3' miRNA: 3'- gaCC-CGGGGCaa-CGAGUUG---UGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 140328 | 0.67 | 0.830982 |
Target: 5'- -gGcGGCCCCGUcgcccucccguuUGCUCuugccguacuGCACgGGCAg -3' miRNA: 3'- gaC-CCGGGGCA------------ACGAGu---------UGUGgUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 127096 | 0.66 | 0.854771 |
Target: 5'- -cGGGCCgCCGggGCgccgGACGCCcGGCu -3' miRNA: 3'- gaCCCGG-GGCaaCGag--UUGUGG-UCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 9944 | 0.66 | 0.854771 |
Target: 5'- -cGGGCCCCuc-GC-CAcCGCCGGCc -3' miRNA: 3'- gaCCCGGGGcaaCGaGUuGUGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 95658 | 0.66 | 0.854771 |
Target: 5'- aUGGGCCagUGUcUGCUCGACGagGGCGu -3' miRNA: 3'- gACCCGGg-GCA-ACGAGUUGUggUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 138459 | 0.66 | 0.876817 |
Target: 5'- --cGGCUCCGgcGCccgCGugGCCGGCGu -3' miRNA: 3'- gacCCGGGGCaaCGa--GUugUGGUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 52144 | 0.66 | 0.876817 |
Target: 5'- -cGGGCCCCGgcggGCgUCGuccuCGCCcGCc -3' miRNA: 3'- gaCCCGGGGCaa--CG-AGUu---GUGGuCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 183050 | 0.66 | 0.862321 |
Target: 5'- -cGGGgCCCG-UGCUCGAggucUACCccgAGCAg -3' miRNA: 3'- gaCCCgGGGCaACGAGUU----GUGG---UCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 143085 | 0.66 | 0.868946 |
Target: 5'- -cGGGCCgcgggaUCGUgacGCUCGagccgcucgucggACGCCGGCAg -3' miRNA: 3'- gaCCCGG------GGCAa--CGAGU-------------UGUGGUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 15285 | 0.66 | 0.862321 |
Target: 5'- -gGGGCCCaGUUGUcCcACGgCAGCAg -3' miRNA: 3'- gaCCCGGGgCAACGaGuUGUgGUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 133064 | 0.66 | 0.862321 |
Target: 5'- -cGGGCCCCuaccuCUCcggcACGCCGGCGc -3' miRNA: 3'- gaCCCGGGGcaac-GAGu---UGUGGUCGU- -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 138527 | 0.66 | 0.862321 |
Target: 5'- -cGcGUCCUGcugcagcUGCUCGACGCCAGCu -3' miRNA: 3'- gaCcCGGGGCa------ACGAGUUGUGGUCGu -5' |
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10927 | 5' | -58 | NC_002794.1 | + | 13493 | 0.66 | 0.854771 |
Target: 5'- -cGGGCgcacggcccCCCGgucccccGCUCAgcggaaccACGCCAGCAg -3' miRNA: 3'- gaCCCG---------GGGCaa-----CGAGU--------UGUGGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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