miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 3' -56.7 NC_002794.1 + 113818 0.66 0.925226
Target:  5'- cGUGGGcGGCGGCGGcgGCggCGUcGUCc -3'
miRNA:   3'- -CACCCaCUGCUGCCa-CGagGCGaUAG- -5'
10928 3' -56.7 NC_002794.1 + 50497 0.66 0.907704
Target:  5'- -gGGGUGugGucaccggGCGGagacGCUCCGCUc-- -3'
miRNA:   3'- caCCCACugC-------UGCCa---CGAGGCGAuag -5'
10928 3' -56.7 NC_002794.1 + 57568 0.67 0.895884
Target:  5'- -cGGGUGGCGGCcuugGCccgCaCGCUGUCg -3'
miRNA:   3'- caCCCACUGCUGcca-CGa--G-GCGAUAG- -5'
10928 3' -56.7 NC_002794.1 + 19312 0.67 0.88934
Target:  5'- uUGGGcGACGcgGCGGUGCaCCauGUUAUCa -3'
miRNA:   3'- cACCCaCUGC--UGCCACGaGG--CGAUAG- -5'
10928 3' -56.7 NC_002794.1 + 79946 0.67 0.886661
Target:  5'- cGUGGGguggacuuggcgcGGCGGCGGgccgGCccgCCGCgUGUCg -3'
miRNA:   3'- -CACCCa------------CUGCUGCCa---CGa--GGCG-AUAG- -5'
10928 3' -56.7 NC_002794.1 + 41237 0.67 0.875602
Target:  5'- -aGGG-GACGugGG-GCUCCaGUcGUCu -3'
miRNA:   3'- caCCCaCUGCugCCaCGAGG-CGaUAG- -5'
10928 3' -56.7 NC_002794.1 + 176074 0.67 0.875602
Target:  5'- -cGGGUGcuccUGACGcUGCUCCGCUc-- -3'
miRNA:   3'- caCCCACu---GCUGCcACGAGGCGAuag -5'
10928 3' -56.7 NC_002794.1 + 103984 0.67 0.861026
Target:  5'- -gGGGUGGCGGCGGcGg-CCGCg--- -3'
miRNA:   3'- caCCCACUGCUGCCaCgaGGCGauag -5'
10928 3' -56.7 NC_002794.1 + 129120 0.68 0.853436
Target:  5'- -gGcGGUGGCGGCGGcGCguacgaCCGCUGg- -3'
miRNA:   3'- caC-CCACUGCUGCCaCGa-----GGCGAUag -5'
10928 3' -56.7 NC_002794.1 + 100423 0.68 0.845654
Target:  5'- -cGGGUGAaugUGACGGUGCagCaGCUAa- -3'
miRNA:   3'- caCCCACU---GCUGCCACGagG-CGAUag -5'
10928 3' -56.7 NC_002794.1 + 65246 0.69 0.804076
Target:  5'- cGUGGGccgGuuGACGGUGUUCgGC-GUCg -3'
miRNA:   3'- -CACCCa--CugCUGCCACGAGgCGaUAG- -5'
10928 3' -56.7 NC_002794.1 + 185509 0.69 0.79528
Target:  5'- -cGGGUGAcggacugcuCGACGGUGgaUCCGCa--- -3'
miRNA:   3'- caCCCACU---------GCUGCCACg-AGGCGauag -5'
10928 3' -56.7 NC_002794.1 + 83143 0.69 0.768072
Target:  5'- -cGGGUcugcccguccagGACGcggaaggcGCGGUGCUCCGCggcggcgggGUCg -3'
miRNA:   3'- caCCCA------------CUGC--------UGCCACGAGGCGa--------UAG- -5'
10928 3' -56.7 NC_002794.1 + 85325 0.7 0.730203
Target:  5'- -cGGGagaacgcGGCGACGacGUGCUCCGCgucGUCg -3'
miRNA:   3'- caCCCa------CUGCUGC--CACGAGGCGa--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.