Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10928 | 3' | -56.7 | NC_002794.1 | + | 185509 | 0.69 | 0.79528 |
Target: 5'- -cGGGUGAcggacugcuCGACGGUGgaUCCGCa--- -3' miRNA: 3'- caCCCACU---------GCUGCCACg-AGGCGauag -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 176074 | 0.67 | 0.875602 |
Target: 5'- -cGGGUGcuccUGACGcUGCUCCGCUc-- -3' miRNA: 3'- caCCCACu---GCUGCcACGAGGCGAuag -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 129120 | 0.68 | 0.853436 |
Target: 5'- -gGcGGUGGCGGCGGcGCguacgaCCGCUGg- -3' miRNA: 3'- caC-CCACUGCUGCCaCGa-----GGCGAUag -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 113818 | 0.66 | 0.925226 |
Target: 5'- cGUGGGcGGCGGCGGcgGCggCGUcGUCc -3' miRNA: 3'- -CACCCaCUGCUGCCa-CGagGCGaUAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 103984 | 0.67 | 0.861026 |
Target: 5'- -gGGGUGGCGGCGGcGg-CCGCg--- -3' miRNA: 3'- caCCCACUGCUGCCaCgaGGCGauag -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 100423 | 0.68 | 0.845654 |
Target: 5'- -cGGGUGAaugUGACGGUGCagCaGCUAa- -3' miRNA: 3'- caCCCACU---GCUGCCACGagG-CGAUag -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 85325 | 0.7 | 0.730203 |
Target: 5'- -cGGGagaacgcGGCGACGacGUGCUCCGCgucGUCg -3' miRNA: 3'- caCCCa------CUGCUGC--CACGAGGCGa--UAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 83143 | 0.69 | 0.768072 |
Target: 5'- -cGGGUcugcccguccagGACGcggaaggcGCGGUGCUCCGCggcggcgggGUCg -3' miRNA: 3'- caCCCA------------CUGC--------UGCCACGAGGCGa--------UAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 79946 | 0.67 | 0.886661 |
Target: 5'- cGUGGGguggacuuggcgcGGCGGCGGgccgGCccgCCGCgUGUCg -3' miRNA: 3'- -CACCCa------------CUGCUGCCa---CGa--GGCG-AUAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 65246 | 0.69 | 0.804076 |
Target: 5'- cGUGGGccgGuuGACGGUGUUCgGC-GUCg -3' miRNA: 3'- -CACCCa--CugCUGCCACGAGgCGaUAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 57568 | 0.67 | 0.895884 |
Target: 5'- -cGGGUGGCGGCcuugGCccgCaCGCUGUCg -3' miRNA: 3'- caCCCACUGCUGcca-CGa--G-GCGAUAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 50497 | 0.66 | 0.907704 |
Target: 5'- -gGGGUGugGucaccggGCGGagacGCUCCGCUc-- -3' miRNA: 3'- caCCCACugC-------UGCCa---CGAGGCGAuag -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 41237 | 0.67 | 0.875602 |
Target: 5'- -aGGG-GACGugGG-GCUCCaGUcGUCu -3' miRNA: 3'- caCCCaCUGCugCCaCGAGG-CGaUAG- -5' |
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10928 | 3' | -56.7 | NC_002794.1 | + | 19312 | 0.67 | 0.88934 |
Target: 5'- uUGGGcGACGcgGCGGUGCaCCauGUUAUCa -3' miRNA: 3'- cACCCaCUGC--UGCCACGaGG--CGAUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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