miRNA display CGI


Results 1 - 20 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 5705 0.66 0.694646
Target:  5'- aCUGCUGGCGgCGgcucuccucgaacacCCGCCG-CGCCaCCu -3'
miRNA:   3'- -GGCGGCCGCaGC---------------GGUGGCaGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 121920 0.66 0.694646
Target:  5'- gCCGCCGaacgcuuccuggccaGCucuuUCGaCGCC-UCGCCGCCg -3'
miRNA:   3'- -GGCGGC---------------CGc---AGCgGUGGcAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 159346 0.66 0.690963
Target:  5'- uCgGCCaGCGU-GUCGcCCGUCGCCuCCc -3'
miRNA:   3'- -GgCGGcCGCAgCGGU-GGCAGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 74235 0.66 0.690963
Target:  5'- uCCgGCUGGacgaGUCuCCgggagaacGCCGUCGCCGUa -3'
miRNA:   3'- -GG-CGGCCg---CAGcGG--------UGGCAGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 172384 0.66 0.690963
Target:  5'- gCGgaGGgGUCuGCCAugaUCG-CGCCGCCg -3'
miRNA:   3'- gGCggCCgCAG-CGGU---GGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 93790 0.66 0.690963
Target:  5'- -aGCCgGGCGaccUGCCGCgGgccgacgaGCCGCCg -3'
miRNA:   3'- ggCGG-CCGCa--GCGGUGgCag------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 163282 0.66 0.690963
Target:  5'- gCGCgCGGCGgUGCCgggGCCGggGCCgggGCCg -3'
miRNA:   3'- gGCG-GCCGCaGCGG---UGGCagCGG---CGG- -5'
10928 5' -64.1 NC_002794.1 + 161146 0.66 0.690963
Target:  5'- cCCGCCGGCGccacgaggCGCgGgCG--GCCGCa -3'
miRNA:   3'- -GGCGGCCGCa-------GCGgUgGCagCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 113068 0.66 0.690963
Target:  5'- aCCGCC-GCGU--CCACgCG-CGCCGCg -3'
miRNA:   3'- -GGCGGcCGCAgcGGUG-GCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 45769 0.66 0.690963
Target:  5'- gCGCUgGGCGgagCGUgagGCCGgagCGCCGCUc -3'
miRNA:   3'- gGCGG-CCGCa--GCGg--UGGCa--GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 74602 0.66 0.690963
Target:  5'- gCCGCCgcGGCcUCGgCACCGUC-CUGgCu -3'
miRNA:   3'- -GGCGG--CCGcAGCgGUGGCAGcGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 45567 0.66 0.690963
Target:  5'- gCGCCGGUGUgGUggcagcggauCACCG--GCCGCg -3'
miRNA:   3'- gGCGGCCGCAgCG----------GUGGCagCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 43282 0.66 0.690963
Target:  5'- aCCGCCgcGGCGgcCGCCA-CGUCcCUGCg -3'
miRNA:   3'- -GGCGG--CCGCa-GCGGUgGCAGcGGCGg -5'
10928 5' -64.1 NC_002794.1 + 20444 0.66 0.690963
Target:  5'- aCGCCGGUGagcgaUGCCGCgGcgcagacgaUCGUCGUCg -3'
miRNA:   3'- gGCGGCCGCa----GCGGUGgC---------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 140331 0.66 0.68173
Target:  5'- cCCGgCGGCcccGUCGCCcucCCGuUUGCUcuuGCCg -3'
miRNA:   3'- -GGCgGCCG---CAGCGGu--GGC-AGCGG---CGG- -5'
10928 5' -64.1 NC_002794.1 + 69257 0.66 0.68173
Target:  5'- gCGCCgaGGCcggCGCCGaCGUCGCgGCg -3'
miRNA:   3'- gGCGG--CCGca-GCGGUgGCAGCGgCGg -5'
10928 5' -64.1 NC_002794.1 + 1859 0.66 0.68173
Target:  5'- nCC-CCGGCuUCGCCuuCG-CGgCCGCCn -3'
miRNA:   3'- -GGcGGCCGcAGCGGugGCaGC-GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7842 0.66 0.68173
Target:  5'- aCGCCcGUcUCGgCGCCcUCGCCGUCc -3'
miRNA:   3'- gGCGGcCGcAGCgGUGGcAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 18944 0.66 0.68173
Target:  5'- uUGCCgGGUGUgGUugguuCAUCGUgGCCGCUg -3'
miRNA:   3'- gGCGG-CCGCAgCG-----GUGGCAgCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 132543 0.66 0.68173
Target:  5'- aCCGauCCGGCGggggGCCcgagcgcggACCgGUCGCuCGCCc -3'
miRNA:   3'- -GGC--GGCCGCag--CGG---------UGG-CAGCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.