Results 1 - 20 of 584 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10928 | 5' | -64.1 | NC_002794.1 | + | 132543 | 0.66 | 0.68173 |
Target: 5'- aCCGauCCGGCGggggGCCcgagcgcggACCgGUCGCuCGCCc -3' miRNA: 3'- -GGC--GGCCGCag--CGG---------UGG-CAGCG-GCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 74235 | 0.66 | 0.690963 |
Target: 5'- uCCgGCUGGacgaGUCuCCgggagaacGCCGUCGCCGUa -3' miRNA: 3'- -GG-CGGCCg---CAGcGG--------UGGCAGCGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 159346 | 0.66 | 0.690963 |
Target: 5'- uCgGCCaGCGU-GUCGcCCGUCGCCuCCc -3' miRNA: 3'- -GgCGGcCGCAgCGGU-GGCAGCGGcGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 108968 | 0.66 | 0.68173 |
Target: 5'- cCCGaucCCGGCGggGCCGCCGaccCGgugaCGCCc -3' miRNA: 3'- -GGC---GGCCGCagCGGUGGCa--GCg---GCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 18944 | 0.66 | 0.68173 |
Target: 5'- uUGCCgGGUGUgGUugguuCAUCGUgGCCGCUg -3' miRNA: 3'- gGCGG-CCGCAgCG-----GUGGCAgCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 7842 | 0.66 | 0.68173 |
Target: 5'- aCGCCcGUcUCGgCGCCcUCGCCGUCc -3' miRNA: 3'- gGCGGcCGcAGCgGUGGcAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 1859 | 0.66 | 0.68173 |
Target: 5'- nCC-CCGGCuUCGCCuuCG-CGgCCGCCn -3' miRNA: 3'- -GGcGGCCGcAGCGGugGCaGC-GGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 69257 | 0.66 | 0.68173 |
Target: 5'- gCGCCgaGGCcggCGCCGaCGUCGCgGCg -3' miRNA: 3'- gGCGG--CCGca-GCGGUgGCAGCGgCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 140331 | 0.66 | 0.68173 |
Target: 5'- cCCGgCGGCcccGUCGCCcucCCGuUUGCUcuuGCCg -3' miRNA: 3'- -GGCgGCCG---CAGCGGu--GGC-AGCGG---CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 172384 | 0.66 | 0.690963 |
Target: 5'- gCGgaGGgGUCuGCCAugaUCG-CGCCGCCg -3' miRNA: 3'- gGCggCCgCAG-CGGU---GGCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 93790 | 0.66 | 0.690963 |
Target: 5'- -aGCCgGGCGaccUGCCGCgGgccgacgaGCCGCCg -3' miRNA: 3'- ggCGG-CCGCa--GCGGUGgCag------CGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 163282 | 0.66 | 0.690963 |
Target: 5'- gCGCgCGGCGgUGCCgggGCCGggGCCgggGCCg -3' miRNA: 3'- gGCG-GCCGCaGCGG---UGGCagCGG---CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 121920 | 0.66 | 0.694646 |
Target: 5'- gCCGCCGaacgcuuccuggccaGCucuuUCGaCGCC-UCGCCGCCg -3' miRNA: 3'- -GGCGGC---------------CGc---AGCgGUGGcAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 20444 | 0.66 | 0.690963 |
Target: 5'- aCGCCGGUGagcgaUGCCGCgGcgcagacgaUCGUCGUCg -3' miRNA: 3'- gGCGGCCGCa----GCGGUGgC---------AGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 43282 | 0.66 | 0.690963 |
Target: 5'- aCCGCCgcGGCGgcCGCCA-CGUCcCUGCg -3' miRNA: 3'- -GGCGG--CCGCa-GCGGUgGCAGcGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 45567 | 0.66 | 0.690963 |
Target: 5'- gCGCCGGUGUgGUggcagcggauCACCG--GCCGCg -3' miRNA: 3'- gGCGGCCGCAgCG----------GUGGCagCGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 74602 | 0.66 | 0.690963 |
Target: 5'- gCCGCCgcGGCcUCGgCACCGUC-CUGgCu -3' miRNA: 3'- -GGCGG--CCGcAGCgGUGGCAGcGGCgG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 45769 | 0.66 | 0.690963 |
Target: 5'- gCGCUgGGCGgagCGUgagGCCGgagCGCCGCUc -3' miRNA: 3'- gGCGG-CCGCa--GCGg--UGGCa--GCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 113068 | 0.66 | 0.690963 |
Target: 5'- aCCGCC-GCGU--CCACgCG-CGCCGCg -3' miRNA: 3'- -GGCGGcCGCAgcGGUG-GCaGCGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 161146 | 0.66 | 0.690963 |
Target: 5'- cCCGCCGGCGccacgaggCGCgGgCG--GCCGCa -3' miRNA: 3'- -GGCGGCCGCa-------GCGgUgGCagCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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