miRNA display CGI


Results 61 - 80 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 140331 0.66 0.68173
Target:  5'- cCCGgCGGCcccGUCGCCcucCCGuUUGCUcuuGCCg -3'
miRNA:   3'- -GGCgGCCG---CAGCGGu--GGC-AGCGG---CGG- -5'
10928 5' -64.1 NC_002794.1 + 132543 0.66 0.68173
Target:  5'- aCCGauCCGGCGggggGCCcgagcgcggACCgGUCGCuCGCCc -3'
miRNA:   3'- -GGC--GGCCGCag--CGG---------UGG-CAGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 78192 0.66 0.672462
Target:  5'- aCGCgCGGCGgCGCgUACUGcacguaggccUCGCaCGCCg -3'
miRNA:   3'- gGCG-GCCGCaGCG-GUGGC----------AGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 70047 0.66 0.672462
Target:  5'- cUCGCCGggcucuGCGUCcucggcgcccuGCUGCUG-CGCUGCCg -3'
miRNA:   3'- -GGCGGC------CGCAG-----------CGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 68254 0.66 0.672462
Target:  5'- gCCGCUGaGCGgCGCgGaCCGgacUCGUCGUCg -3'
miRNA:   3'- -GGCGGC-CGCaGCGgU-GGC---AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 10667 0.66 0.672462
Target:  5'- nCgGUCGGCGcggucaUCGCgGCuCG-CGCCGCg -3'
miRNA:   3'- -GgCGGCCGC------AGCGgUG-GCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 143261 0.66 0.676173
Target:  5'- -aGCCGaCGUcCGCCcgagacgcccgcccgACCGcCGCCGCg -3'
miRNA:   3'- ggCGGCcGCA-GCGG---------------UGGCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 125245 0.66 0.672462
Target:  5'- aCCaCCGG-GUCGCUccGCCccgGUCGCacCGCCa -3'
miRNA:   3'- -GGcGGCCgCAGCGG--UGG---CAGCG--GCGG- -5'
10928 5' -64.1 NC_002794.1 + 132871 0.66 0.672462
Target:  5'- aCCGCCGGCGcCuGgCACCccCGCaCGUg -3'
miRNA:   3'- -GGCGGCCGCaG-CgGUGGcaGCG-GCGg -5'
10928 5' -64.1 NC_002794.1 + 10390 0.66 0.672462
Target:  5'- gCCGCgGGCGgcgGCCGCgG-CGaggggaCCGCCu -3'
miRNA:   3'- -GGCGgCCGCag-CGGUGgCaGC------GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 78997 0.66 0.678953
Target:  5'- gCGgCGGCcguGUCGCgcucgucaggggggCGCCGgCGCCGUCu -3'
miRNA:   3'- gGCgGCCG---CAGCG--------------GUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 58514 0.66 0.678953
Target:  5'- aCgGCuCGGCGUCGUCggggucuucuucgaGCCGggCGagCGCCg -3'
miRNA:   3'- -GgCG-GCCGCAGCGG--------------UGGCa-GCg-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 69313 0.66 0.68173
Target:  5'- aCUGaCCGGgaacacCGUCGCCGCgGcggUGCUGCUg -3'
miRNA:   3'- -GGC-GGCC------GCAGCGGUGgCa--GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 181653 0.66 0.68173
Target:  5'- cCCGCUGGCcgccccaaCGCCACC--CGCCGaCg -3'
miRNA:   3'- -GGCGGCCGca------GCGGUGGcaGCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 172290 0.66 0.68173
Target:  5'- -gGcCCGGUGcCGCCGCCaccCGCCGauCCa -3'
miRNA:   3'- ggC-GGCCGCaGCGGUGGca-GCGGC--GG- -5'
10928 5' -64.1 NC_002794.1 + 119407 0.66 0.68173
Target:  5'- cCCG-UGGCGccCGCCccuccACCGUCcGCCgGCCc -3'
miRNA:   3'- -GGCgGCCGCa-GCGG-----UGGCAG-CGG-CGG- -5'
10928 5' -64.1 NC_002794.1 + 96889 0.66 0.68173
Target:  5'- gCCGUCGGCGgCGCCgugGCCucgGUgGUCGgCg -3'
miRNA:   3'- -GGCGGCCGCaGCGG---UGG---CAgCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 175987 0.66 0.68173
Target:  5'- aCCGUCuacaccuGCGUgGCCgACCGcUGCCGCg -3'
miRNA:   3'- -GGCGGc------CGCAgCGG-UGGCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 123857 0.66 0.678953
Target:  5'- aCCGCCGgaGCucgaggaagccgagGUCGCgcaGCCGcuugagcuguUCGCCGCUg -3'
miRNA:   3'- -GGCGGC--CG--------------CAGCGg--UGGC----------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11166 0.66 0.678953
Target:  5'- aCGCCGGCGgaggGUCGuCCGUCgGCUcuuccgagcgacagGCCa -3'
miRNA:   3'- gGCGGCCGCag--CGGU-GGCAG-CGG--------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.