miRNA display CGI


Results 81 - 100 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 11166 0.66 0.678953
Target:  5'- aCGCCGGCGgaggGUCGuCCGUCgGCUcuuccgagcgacagGCCa -3'
miRNA:   3'- gGCGGCCGCag--CGGU-GGCAG-CGG--------------CGG- -5'
10928 5' -64.1 NC_002794.1 + 58514 0.66 0.678953
Target:  5'- aCgGCuCGGCGUCGUCggggucuucuucgaGCCGggCGagCGCCg -3'
miRNA:   3'- -GgCG-GCCGCAGCGG--------------UGGCa-GCg-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 7067 0.67 0.635183
Target:  5'- gCgGCCGGCc---CCGCCGagCGCCGUCc -3'
miRNA:   3'- -GgCGGCCGcagcGGUGGCa-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 2361 0.67 0.635183
Target:  5'- uUCGCCcGCGU-GCCACUccacCGCCGCg -3'
miRNA:   3'- -GGCGGcCGCAgCGGUGGca--GCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 11085 0.67 0.625842
Target:  5'- gCGCCGGC-UCGCU--CGUCGacaCCGUCa -3'
miRNA:   3'- gGCGGCCGcAGCGGugGCAGC---GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9155 0.67 0.625842
Target:  5'- aCGCgGGCGgugaagaGC--CCGUCGCUGCUa -3'
miRNA:   3'- gGCGgCCGCag-----CGguGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 96585 0.67 0.629578
Target:  5'- gCuCCGGCG-CGCUcCCGggcucuuccgcgacCGCCGCCa -3'
miRNA:   3'- gGcGGCCGCaGCGGuGGCa-------------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 195360 0.67 0.634249
Target:  5'- gUCGCCuggguggGGCGUUGCCuCCGguucuggC-CCGCCc -3'
miRNA:   3'- -GGCGG-------CCGCAGCGGuGGCa------GcGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 120371 0.67 0.625842
Target:  5'- aCgGCCcGCGUacgaGCCggcaACCaGUcCGCCGCCg -3'
miRNA:   3'- -GgCGGcCGCAg---CGG----UGG-CA-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 135803 0.67 0.625842
Target:  5'- aCCuUCGGC--CGCCgcACCGUgcCGCCGCCc -3'
miRNA:   3'- -GGcGGCCGcaGCGG--UGGCA--GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 183302 0.67 0.635183
Target:  5'- gCUaCCGGCGcaUCGCCAcggucuucCCGuUCGgCGCCu -3'
miRNA:   3'- -GGcGGCCGC--AGCGGU--------GGC-AGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 99502 0.67 0.635183
Target:  5'- uCCGCCuGGcCGagGgCACCGUgG-CGCCg -3'
miRNA:   3'- -GGCGG-CC-GCagCgGUGGCAgCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 150984 0.67 0.635183
Target:  5'- aCGCUGcaacucGCGgaCGaCCugCGUCuGCCGCCg -3'
miRNA:   3'- gGCGGC------CGCa-GC-GGugGCAG-CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 19628 0.67 0.635183
Target:  5'- cUCGcCCGGUGUCGauauCCGUCGauggUGCCg -3'
miRNA:   3'- -GGC-GGCCGCAGCggu-GGCAGCg---GCGG- -5'
10928 5' -64.1 NC_002794.1 + 11286 0.67 0.635183
Target:  5'- gCCGCCgcGGCGgcgGCgGCCacgCGCgGCCg -3'
miRNA:   3'- -GGCGG--CCGCag-CGgUGGca-GCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 175699 0.67 0.635183
Target:  5'- gCCGCCuGGCG--GCCccauACCGcgagagccCGCCGCCc -3'
miRNA:   3'- -GGCGG-CCGCagCGG----UGGCa-------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 47739 0.67 0.635183
Target:  5'- aCgGUCGGUGUCgGgCGCgGg-GCCGCCg -3'
miRNA:   3'- -GgCGGCCGCAG-CgGUGgCagCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 131031 0.67 0.635183
Target:  5'- -aGCCGGCGcCGaCgACCGgacggCGCgGCg -3'
miRNA:   3'- ggCGGCCGCaGC-GgUGGCa----GCGgCGg -5'
10928 5' -64.1 NC_002794.1 + 54316 0.67 0.635183
Target:  5'- gCCGaaGGCGcgaaucCGCCACC--CGCgGCCg -3'
miRNA:   3'- -GGCggCCGCa-----GCGGUGGcaGCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 142811 0.67 0.625842
Target:  5'- gCCGCgGcuccaGCGUagGCagCGCCG-CGCCGCCa -3'
miRNA:   3'- -GGCGgC-----CGCAg-CG--GUGGCaGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.