miRNA display CGI


Results 1 - 20 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 1833 0.92 0.0172
Target:  5'- gCCGCCGGCGccucgccCGCCGCCGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCCGCa------GCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 142959 0.91 0.017639
Target:  5'- aCG-CGGCGcCGCCGCCGUCGCCGCCg -3'
miRNA:   3'- gGCgGCCGCaGCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9770 0.91 0.019021
Target:  5'- uUCGCCgGGCGcuUCGUCGCCGUCGCCGCCg -3'
miRNA:   3'- -GGCGG-CCGC--AGCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 179313 0.91 0.019021
Target:  5'- uCC-CCGGCGUCGCCACCGccacCGCCGCCg -3'
miRNA:   3'- -GGcGGCCGCAGCGGUGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 155529 0.9 0.022679
Target:  5'- cCCGCCGcGCGgacgCGCCACCGgcggCGCCGCCu -3'
miRNA:   3'- -GGCGGC-CGCa---GCGGUGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 140853 0.89 0.025709
Target:  5'- cUCGCCgGGCGUcCGCCGCCG-CGCCGCCg -3'
miRNA:   3'- -GGCGG-CCGCA-GCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 90127 0.88 0.032202
Target:  5'- gCCGUCGggaaaGCGUCGUCGCCGUCGUCGCCg -3'
miRNA:   3'- -GGCGGC-----CGCAGCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 67012 0.87 0.03648
Target:  5'- gCGCCGGCGUCGacgaCGCCGcUGCCGCCg -3'
miRNA:   3'- gGCGGCCGCAGCg---GUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 167183 0.86 0.041315
Target:  5'- gCCGCCGGUGgccgucgcCGCCGCCGUUGCUGCUg -3'
miRNA:   3'- -GGCGGCCGCa-------GCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 183696 0.86 0.044511
Target:  5'- aUCGcCCGGauCGUCGCCGCCGaCGCCGCCg -3'
miRNA:   3'- -GGC-GGCC--GCAGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 179374 0.85 0.052936
Target:  5'- gCCGCCGccucCGcCGCCACCGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCc---GCaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 89954 0.85 0.050382
Target:  5'- gCCGCggCGGCGgCGCUACCGcCGCCGCCg -3'
miRNA:   3'- -GGCG--GCCGCaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 117921 0.85 0.046775
Target:  5'- cCCGCCGgaggcgccGCGaUCGCCGCCGUCGCCgaGCCg -3'
miRNA:   3'- -GGCGGC--------CGC-AGCGGUGGCAGCGG--CGG- -5'
10928 5' -64.1 NC_002794.1 + 184072 0.85 0.04563
Target:  5'- aUCGCCgcGGUGUccguggcgccgcCGCCGCCGUCGCCGCCu -3'
miRNA:   3'- -GGCGG--CCGCA------------GCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 1800 0.85 0.052936
Target:  5'- gCCGCCGagaGCGcCGCCuuCGUCGCCGCCa -3'
miRNA:   3'- -GGCGGC---CGCaGCGGugGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 137847 0.85 0.047712
Target:  5'- gCCGCCGGgGcCGCCGCCGgcgaacccgccgCGCCGCCc -3'
miRNA:   3'- -GGCGGCCgCaGCGGUGGCa-----------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 112949 0.85 0.047949
Target:  5'- uCCGCCucGCGgcccCGCCGCCGUCGCCGCUc -3'
miRNA:   3'- -GGCGGc-CGCa---GCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 142120 0.84 0.059883
Target:  5'- aUCGCCGGC--CGCCGCUGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCCGcaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 158096 0.84 0.061375
Target:  5'- gCGCCGGCGggaGCgGCCGUCGUCGUCg -3'
miRNA:   3'- gGCGGCCGCag-CGgUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 157355 0.84 0.055479
Target:  5'- gCGCCGGuCGcCGCCGCCuccgcgaucccagGUCGCCGCCg -3'
miRNA:   3'- gGCGGCC-GCaGCGGUGG-------------CAGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.