Results 21 - 40 of 584 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10928 | 5' | -64.1 | NC_002794.1 | + | 74632 | 0.84 | 0.05426 |
Target: 5'- gCCGCCGcuacaGUCGCCGCUGcCGCCGCCg -3' miRNA: 3'- -GGCGGCcg---CAGCGGUGGCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 158096 | 0.84 | 0.061375 |
Target: 5'- gCGCCGGCGggaGCgGCCGUCGUCGUCg -3' miRNA: 3'- gGCGGCCGCag-CGgUGGCAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 142120 | 0.84 | 0.059883 |
Target: 5'- aUCGCCGGC--CGCCGCUGcCGCCGCCg -3' miRNA: 3'- -GGCGGCCGcaGCGGUGGCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 71394 | 0.83 | 0.062903 |
Target: 5'- gUCGUCGGCGUCGCCGCCGcaCGCCcggaccGCCg -3' miRNA: 3'- -GGCGGCCGCAGCGGUGGCa-GCGG------CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 8279 | 0.83 | 0.069388 |
Target: 5'- gCCGUCGGCG-CgGCCGCCGUCGCgaCGCCc -3' miRNA: 3'- -GGCGGCCGCaG-CGGUGGCAGCG--GCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 135217 | 0.83 | 0.068376 |
Target: 5'- gCGCCGGCGgCGCCggccacccggcgcgcGCCGcCGCCGCCu -3' miRNA: 3'- gGCGGCCGCaGCGG---------------UGGCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 134332 | 0.83 | 0.069388 |
Target: 5'- gCCGCCGGCGgcCGCCGCgaagaCGaCGCCGCCg -3' miRNA: 3'- -GGCGGCCGCa-GCGGUG-----GCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 84244 | 0.83 | 0.066069 |
Target: 5'- -gGCCGGCGggGCCGCCGcggcCGCCGCCg -3' miRNA: 3'- ggCGGCCGCagCGGUGGCa---GCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 5998 | 0.83 | 0.062903 |
Target: 5'- gCCGUCGGCGUCGUCGCCGcCGaCCgGCCc -3' miRNA: 3'- -GGCGGCCGCAGCGGUGGCaGC-GG-CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 114314 | 0.82 | 0.076515 |
Target: 5'- gCGCUGGaCGgcugcCGCCGCCGcCGCCGCCg -3' miRNA: 3'- gGCGGCC-GCa----GCGGUGGCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 7546 | 0.82 | 0.084339 |
Target: 5'- cCCGUCGuCGUCGUCcUCGUCGCCGCCg -3' miRNA: 3'- -GGCGGCcGCAGCGGuGGCAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 179343 | 0.82 | 0.080336 |
Target: 5'- uCC-CCGGCGUCGCCACCGcCGUCcCCg -3' miRNA: 3'- -GGcGGCCGCAGCGGUGGCaGCGGcGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 66860 | 0.82 | 0.07467 |
Target: 5'- -aGCuCGGCGgucgaccCGCuCACCGUCGCCGCCg -3' miRNA: 3'- ggCG-GCCGCa------GCG-GUGGCAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 166654 | 0.82 | 0.078403 |
Target: 5'- uCCGuCCGGCgGUCgGCgGCCGUCgGCCGCCg -3' miRNA: 3'- -GGC-GGCCG-CAG-CGgUGGCAG-CGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 90179 | 0.82 | 0.080336 |
Target: 5'- aCCGCCGGgaaCGUCGgaaCCGCCGUCGCCuCCg -3' miRNA: 3'- -GGCGGCC---GCAGC---GGUGGCAGCGGcGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 64577 | 0.82 | 0.072868 |
Target: 5'- aCCGCCGGCGcCGUCGCUc-CGCCGCCc -3' miRNA: 3'- -GGCGGCCGCaGCGGUGGcaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 146420 | 0.82 | 0.080336 |
Target: 5'- gCGuCCGGCGcggUCGUCGCCGUggCGCCGCCg -3' miRNA: 3'- gGC-GGCCGC---AGCGGUGGCA--GCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 77672 | 0.81 | 0.095196 |
Target: 5'- gCGCCGaccuucCGUCGCCGCCGcCGUCGCCu -3' miRNA: 3'- gGCGGCc-----GCAGCGGUGGCaGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 43639 | 0.81 | 0.087254 |
Target: 5'- gCGUCGGaCGUCGCgcgccacgucgcgcgCACCGUCGCCGUCg -3' miRNA: 3'- gGCGGCC-GCAGCG---------------GUGGCAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 141941 | 0.81 | 0.089395 |
Target: 5'- gCCGUCGGCGgCGCCGCCGaaccgagcucgcaGCCGCCa -3' miRNA: 3'- -GGCGGCCGCaGCGGUGGCag-----------CGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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