miRNA display CGI


Results 41 - 60 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 155368 0.81 0.09752
Target:  5'- aCgGCCGGCGcUCGCCGCUcgaGUCacgGCCGCCg -3'
miRNA:   3'- -GgCGGCCGC-AGCGGUGG---CAG---CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 131960 0.81 0.092923
Target:  5'- cUCGCCGGcCGUCGCUcgcGCCGcgacCGCCGCCc -3'
miRNA:   3'- -GGCGGCC-GCAGCGG---UGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 71594 0.81 0.095196
Target:  5'- gUCGCCGGCcagccgccgCGCCGuCCGUCGUCGCCc -3'
miRNA:   3'- -GGCGGCCGca-------GCGGU-GGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 141941 0.81 0.089395
Target:  5'- gCCGUCGGCGgCGCCGCCGaaccgagcucgcaGCCGCCa -3'
miRNA:   3'- -GGCGGCCGCaGCGGUGGCag-----------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 43639 0.81 0.087254
Target:  5'- gCGUCGGaCGUCGCgcgccacgucgcgcgCACCGUCGCCGUCg -3'
miRNA:   3'- gGCGGCC-GCAGCG---------------GUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 1923 0.8 0.102331
Target:  5'- aCCGCCGGCuccggcccCGCCGCCacCGCCGCCa -3'
miRNA:   3'- -GGCGGCCGca------GCGGUGGcaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11331 0.8 0.115354
Target:  5'- gCGCgGGCGaCGCCGCCcacCGCCGCCu -3'
miRNA:   3'- gGCGgCCGCaGCGGUGGca-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8321 0.8 0.102331
Target:  5'- gCCGCCGcgacCGcCGCCACCGcCGCCGUCg -3'
miRNA:   3'- -GGCGGCc---GCaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9801 0.8 0.102331
Target:  5'- uCC-CCGGUccGUgGCCACCGcCGCCGCCg -3'
miRNA:   3'- -GGcGGCCG--CAgCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 87722 0.8 0.107365
Target:  5'- aCGCCGGCuggauUCGCCGCCGggagCGCCGgCg -3'
miRNA:   3'- gGCGGCCGc----AGCGGUGGCa---GCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 115437 0.8 0.099898
Target:  5'- gCGCCgGGCGgggcCGCCGCCGgcgGCCGCCg -3'
miRNA:   3'- gGCGG-CCGCa---GCGGUGGCag-CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 2462 0.8 0.107365
Target:  5'- uCCGCCucGCGcUCGCCuCCGcCGCCGCCg -3'
miRNA:   3'- -GGCGGc-CGC-AGCGGuGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 94294 0.8 0.112631
Target:  5'- aCGCCGGCGggagUGCCgGCCGcCGCgGCCg -3'
miRNA:   3'- gGCGGCCGCa---GCGG-UGGCaGCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 83637 0.8 0.109969
Target:  5'- cCCGCUccagGGCGUCcaggGCCGCCGcgaaCGCCGCCg -3'
miRNA:   3'- -GGCGG----CCGCAG----CGGUGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 177215 0.8 0.107108
Target:  5'- uCCGCCGGCacccgggacgaccGUCGCCgcuuccucgGCUGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCCG-------------CAGCGG---------UGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 85600 0.8 0.112631
Target:  5'- cCCGCgCGGCGUCGCgACgG-CgGCCGCCg -3'
miRNA:   3'- -GGCG-GCCGCAGCGgUGgCaG-CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 149543 0.8 0.107365
Target:  5'- gCGgCGGCGaCGgCGCCGUCGCCGCg -3'
miRNA:   3'- gGCgGCCGCaGCgGUGGCAGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 147254 0.8 0.11453
Target:  5'- gCCGUCGGCGUCgGCCucagacgcggagcgGCCGUCggggcccgcgaGCCGCCg -3'
miRNA:   3'- -GGCGGCCGCAG-CGG--------------UGGCAG-----------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 44233 0.8 0.112362
Target:  5'- aCgGCCGGCacuuggcUCGCCGCCGgccggcacuuggcUCGCCGCCg -3'
miRNA:   3'- -GgCGGCCGc------AGCGGUGGC-------------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 65221 0.79 0.12991
Target:  5'- gUCGCCGGCccgccCGCCGCCc-CGCCGCCg -3'
miRNA:   3'- -GGCGGCCGca---GCGGUGGcaGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.