miRNA display CGI


Results 61 - 80 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 178217 0.79 0.126869
Target:  5'- cCCGCCGccGCGgccgcCGCCACCGccgccacCGCCGCCg -3'
miRNA:   3'- -GGCGGC--CGCa----GCGGUGGCa------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 113302 0.79 0.126869
Target:  5'- cCCGCCGGCccaGCCggcgagGCCGaCGCCGCCg -3'
miRNA:   3'- -GGCGGCCGcagCGG------UGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 52139 0.79 0.120696
Target:  5'- cCCgGCgGGCGUCGuccucgcCCGCCGgacgCGCCGCCg -3'
miRNA:   3'- -GG-CGgCCGCAGC-------GGUGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 54215 0.79 0.133018
Target:  5'- -gGCCGGCGUgGCCGCgGcCGCCGgCg -3'
miRNA:   3'- ggCGGCCGCAgCGGUGgCaGCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 88581 0.79 0.126869
Target:  5'- uCCGCCGcCGUCGCC-CCGUCGUCGaCg -3'
miRNA:   3'- -GGCGGCcGCAGCGGuGGCAGCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 164876 0.79 0.12991
Target:  5'- uCC-CCGGCGacggcggggucuUCGCCGgaCGUCGCCGCCg -3'
miRNA:   3'- -GGcGGCCGC------------AGCGGUg-GCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 49623 0.79 0.120984
Target:  5'- gUCG-CGGCGUCGUCAUCGUCGUCGaCCu -3'
miRNA:   3'- -GGCgGCCGCAGCGGUGGCAGCGGC-GG- -5'
10928 5' -64.1 NC_002794.1 + 183627 0.79 0.120984
Target:  5'- gCGCCGGCGgCGCCGuCCG-CGgCGCCg -3'
miRNA:   3'- gGCGGCCGCaGCGGU-GGCaGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 96052 0.78 0.136194
Target:  5'- gCCGCgGGCGcCGgCGCCGUCGgCCGaCCu -3'
miRNA:   3'- -GGCGgCCGCaGCgGUGGCAGC-GGC-GG- -5'
10928 5' -64.1 NC_002794.1 + 146378 0.78 0.149608
Target:  5'- gCCGCgGGUcugucgaccucGUCGCCGUCGUCGCuCGCCg -3'
miRNA:   3'- -GGCGgCCG-----------CAGCGGUGGCAGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 113187 0.78 0.13944
Target:  5'- gCGCCGGCGgaUCGCaCGCCGuUCGCCcggcgcGCCg -3'
miRNA:   3'- gGCGGCCGC--AGCG-GUGGC-AGCGG------CGG- -5'
10928 5' -64.1 NC_002794.1 + 163181 0.78 0.135234
Target:  5'- uCCGCCaaccguccuccggaGGCGUCGCgGgCGacUCGCCGCCa -3'
miRNA:   3'- -GGCGG--------------CCGCAGCGgUgGC--AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 71458 0.78 0.149608
Target:  5'- gUCGCCGGuCGUCGgggCGCCGUCcGCCGCg -3'
miRNA:   3'- -GGCGGCC-GCAGCg--GUGGCAG-CGGCGg -5'
10928 5' -64.1 NC_002794.1 + 118886 0.78 0.152788
Target:  5'- cCCGCCGaGCucgaccugguccuGUCGaCCACCGUCaccgggauGCCGCCg -3'
miRNA:   3'- -GGCGGC-CG-------------CAGC-GGUGGCAG--------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11982 0.78 0.136194
Target:  5'- aCCGCCGacacCGCCGCCGUcacCGCCGCCg -3'
miRNA:   3'- -GGCGGCcgcaGCGGUGGCA---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 14262 0.78 0.156757
Target:  5'- gCGaCCGG-GUCGCC-CCGUUGCCGCa -3'
miRNA:   3'- gGC-GGCCgCAGCGGuGGCAGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 167149 0.78 0.153145
Target:  5'- gCUGCCGuCGUCGCCGCCGUcCGaCCGUg -3'
miRNA:   3'- -GGCGGCcGCAGCGGUGGCA-GC-GGCGg -5'
10928 5' -64.1 NC_002794.1 + 12030 0.78 0.156757
Target:  5'- aCCGCCucCGUCGCCGacgacaggcucuCCGUCGCgGCCg -3'
miRNA:   3'- -GGCGGccGCAGCGGU------------GGCAGCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 3549 0.78 0.146146
Target:  5'- cUCGUCcGCGcUCGCCGCCGcCGCCGCUu -3'
miRNA:   3'- -GGCGGcCGC-AGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 46633 0.78 0.146146
Target:  5'- -aGCgaGGCGcCGCCGCCGUCGCCGg- -3'
miRNA:   3'- ggCGg-CCGCaGCGGUGGCAGCGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.