miRNA display CGI


Results 21 - 40 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 88673 0.84 0.056167
Target:  5'- -aGCCGGCGcCGCCGCCGccggccucgcccggCGCCGCCg -3'
miRNA:   3'- ggCGGCCGCaGCGGUGGCa-------------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 142120 0.84 0.059883
Target:  5'- aUCGCCGGC--CGCCGCUGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCCGcaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 158096 0.84 0.061375
Target:  5'- gCGCCGGCGggaGCgGCCGUCGUCGUCg -3'
miRNA:   3'- gGCGGCCGCag-CGgUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 5998 0.83 0.062903
Target:  5'- gCCGUCGGCGUCGUCGCCGcCGaCCgGCCc -3'
miRNA:   3'- -GGCGGCCGCAGCGGUGGCaGC-GG-CGG- -5'
10928 5' -64.1 NC_002794.1 + 71394 0.83 0.062903
Target:  5'- gUCGUCGGCGUCGCCGCCGcaCGCCcggaccGCCg -3'
miRNA:   3'- -GGCGGCCGCAGCGGUGGCa-GCGG------CGG- -5'
10928 5' -64.1 NC_002794.1 + 84244 0.83 0.066069
Target:  5'- -gGCCGGCGggGCCGCCGcggcCGCCGCCg -3'
miRNA:   3'- ggCGGCCGCagCGGUGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 135217 0.83 0.068376
Target:  5'- gCGCCGGCGgCGCCggccacccggcgcgcGCCGcCGCCGCCu -3'
miRNA:   3'- gGCGGCCGCaGCGG---------------UGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 134332 0.83 0.069388
Target:  5'- gCCGCCGGCGgcCGCCGCgaagaCGaCGCCGCCg -3'
miRNA:   3'- -GGCGGCCGCa-GCGGUG-----GCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8279 0.83 0.069388
Target:  5'- gCCGUCGGCG-CgGCCGCCGUCGCgaCGCCc -3'
miRNA:   3'- -GGCGGCCGCaG-CGGUGGCAGCG--GCGG- -5'
10928 5' -64.1 NC_002794.1 + 64577 0.82 0.072868
Target:  5'- aCCGCCGGCGcCGUCGCUc-CGCCGCCc -3'
miRNA:   3'- -GGCGGCCGCaGCGGUGGcaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 66860 0.82 0.07467
Target:  5'- -aGCuCGGCGgucgaccCGCuCACCGUCGCCGCCg -3'
miRNA:   3'- ggCG-GCCGCa------GCG-GUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 114314 0.82 0.076515
Target:  5'- gCGCUGGaCGgcugcCGCCGCCGcCGCCGCCg -3'
miRNA:   3'- gGCGGCC-GCa----GCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 166654 0.82 0.078403
Target:  5'- uCCGuCCGGCgGUCgGCgGCCGUCgGCCGCCg -3'
miRNA:   3'- -GGC-GGCCG-CAG-CGgUGGCAG-CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 90179 0.82 0.080336
Target:  5'- aCCGCCGGgaaCGUCGgaaCCGCCGUCGCCuCCg -3'
miRNA:   3'- -GGCGGCC---GCAGC---GGUGGCAGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 179343 0.82 0.080336
Target:  5'- uCC-CCGGCGUCGCCACCGcCGUCcCCg -3'
miRNA:   3'- -GGcGGCCGCAGCGGUGGCaGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 146420 0.82 0.080336
Target:  5'- gCGuCCGGCGcggUCGUCGCCGUggCGCCGCCg -3'
miRNA:   3'- gGC-GGCCGC---AGCGGUGGCA--GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7546 0.82 0.084339
Target:  5'- cCCGUCGuCGUCGUCcUCGUCGCCGCCg -3'
miRNA:   3'- -GGCGGCcGCAGCGGuGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 43639 0.81 0.087254
Target:  5'- gCGUCGGaCGUCGCgcgccacgucgcgcgCACCGUCGCCGUCg -3'
miRNA:   3'- gGCGGCC-GCAGCG---------------GUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 141941 0.81 0.089395
Target:  5'- gCCGUCGGCGgCGCCGCCGaaccgagcucgcaGCCGCCa -3'
miRNA:   3'- -GGCGGCCGCaGCGGUGGCag-----------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 86418 0.81 0.090703
Target:  5'- aCCGCCGGgGUCGcCCGCCcUCGCCuCCu -3'
miRNA:   3'- -GGCGGCCgCAGC-GGUGGcAGCGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.