miRNA display CGI


Results 41 - 60 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 70047 0.66 0.672462
Target:  5'- cUCGCCGggcucuGCGUCcucggcgcccuGCUGCUG-CGCUGCCg -3'
miRNA:   3'- -GGCGGC------CGCAG-----------CGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 78192 0.66 0.672462
Target:  5'- aCGCgCGGCGgCGCgUACUGcacguaggccUCGCaCGCCg -3'
miRNA:   3'- gGCG-GCCGCaGCG-GUGGC----------AGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 39934 0.66 0.671534
Target:  5'- -aGCCGGgugcuUGcCGUCACCGgggcucuUCGCCGUCc -3'
miRNA:   3'- ggCGGCC-----GCaGCGGUGGC-------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 175426 0.66 0.663167
Target:  5'- gCGCCGGagGaCGUgCACCGcuggaGCCGCCu -3'
miRNA:   3'- gGCGGCCg-CaGCG-GUGGCag---CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 179128 0.66 0.663167
Target:  5'- gCGCCGGCuccGUC-CCAUC-UUGCCgGCCc -3'
miRNA:   3'- gGCGGCCG---CAGcGGUGGcAGCGG-CGG- -5'
10928 5' -64.1 NC_002794.1 + 13791 0.66 0.663167
Target:  5'- gCGCCuGCGUCcggucgGCCACCGccaGCCaGCg -3'
miRNA:   3'- gGCGGcCGCAG------CGGUGGCag-CGG-CGg -5'
10928 5' -64.1 NC_002794.1 + 127572 0.66 0.663167
Target:  5'- gCCaGCCgGGCGUacgaaCGCC-UCGUgGCgGCCg -3'
miRNA:   3'- -GG-CGG-CCGCA-----GCGGuGGCAgCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 129152 0.66 0.663167
Target:  5'- aCGCCGcGCc-CGgCACgGcCGCCGCCn -3'
miRNA:   3'- gGCGGC-CGcaGCgGUGgCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 195554 0.66 0.663167
Target:  5'- aCGCCGGgccCGCCccacccccacGCgCG-CGCCGCCg -3'
miRNA:   3'- gGCGGCCgcaGCGG----------UG-GCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 83863 0.66 0.663167
Target:  5'- aCGCCcuGCG-CgGUCACCaGUCGgCGCCg -3'
miRNA:   3'- gGCGGc-CGCaG-CGGUGG-CAGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 4289 0.66 0.663167
Target:  5'- aCGCC-GCuUCGCCGaaGcUGCCGCCc -3'
miRNA:   3'- gGCGGcCGcAGCGGUggCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 58457 0.66 0.662236
Target:  5'- uCUGuCCGGCGUccgcggaCGCCgcggagACCG-CGCCGgCg -3'
miRNA:   3'- -GGC-GGCCGCA-------GCGG------UGGCaGCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 80806 0.66 0.662236
Target:  5'- gCgGCgGGCGgcagCGCCGuCCaGUCcacggccucggcgGCCGCCc -3'
miRNA:   3'- -GgCGgCCGCa---GCGGU-GG-CAG-------------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 96161 0.66 0.660374
Target:  5'- gCGCUGGCGccgcggauguucuuUCGCgACCGgccguacgUGCUGUCg -3'
miRNA:   3'- gGCGGCCGC--------------AGCGgUGGCa-------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 111661 0.66 0.658512
Target:  5'- cCCGCCucccaccaccccgGGCGcgcucccucucccCGCCACCGUCucccucccaCCGCCc -3'
miRNA:   3'- -GGCGG-------------CCGCa------------GCGGUGGCAGc--------GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 47654 0.66 0.653851
Target:  5'- gCGCCGGCGcgCGCUcgaucggucuCCGgUCGgCGUCa -3'
miRNA:   3'- gGCGGCCGCa-GCGGu---------GGC-AGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11841 0.66 0.653851
Target:  5'- aUCGCCGGC--CGCCACgGcacCGCgCGCa -3'
miRNA:   3'- -GGCGGCCGcaGCGGUGgCa--GCG-GCGg -5'
10928 5' -64.1 NC_002794.1 + 15492 0.66 0.653851
Target:  5'- aCGaCCGGCGcgaggaCGCUGCCGgccaGCUGCUc -3'
miRNA:   3'- gGC-GGCCGCa-----GCGGUGGCag--CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 140527 0.66 0.653851
Target:  5'- uCCGaggacCCGGgGUCGCgC-CCGagGCgGCCg -3'
miRNA:   3'- -GGC-----GGCCgCAGCG-GuGGCagCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 77065 0.66 0.653851
Target:  5'- uCCGCa-GCGUCGcCCGCUugggcUUGCUGCCc -3'
miRNA:   3'- -GGCGgcCGCAGC-GGUGGc----AGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.