miRNA display CGI


Results 21 - 40 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 2462 0.8 0.107365
Target:  5'- uCCGCCucGCGcUCGCCuCCGcCGCCGCCg -3'
miRNA:   3'- -GGCGGc-CGC-AGCGGuGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 2571 0.78 0.142757
Target:  5'- gCGCCGGUaGUCGCCGuCCGcuccgCGCCGCa -3'
miRNA:   3'- gGCGGCCG-CAGCGGU-GGCa----GCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 3206 0.73 0.299561
Target:  5'- gCCGCCGcGCGcUCGCgcgacucgaagCGCCGgcCGCCGUCg -3'
miRNA:   3'- -GGCGGC-CGC-AGCG-----------GUGGCa-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 3331 0.68 0.579315
Target:  5'- uUGCCGcGCGUCaGCCAguuaaagugcCCGUCGuaGCg -3'
miRNA:   3'- gGCGGC-CGCAG-CGGU----------GGCAGCggCGg -5'
10928 5' -64.1 NC_002794.1 + 3424 0.76 0.201831
Target:  5'- gCgGCCGGCGcgUCGCgCGCCucgcaGUCGCgCGCCa -3'
miRNA:   3'- -GgCGGCCGC--AGCG-GUGG-----CAGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 3491 0.7 0.413238
Target:  5'- gCCGCCGaccgagcGCGggcugacCGCCACCGcCG-CGCCg -3'
miRNA:   3'- -GGCGGC-------CGCa------GCGGUGGCaGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 3549 0.78 0.146146
Target:  5'- cUCGUCcGCGcUCGCCGCCGcCGCCGCUu -3'
miRNA:   3'- -GGCGGcCGC-AGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 4179 0.68 0.551733
Target:  5'- gCGgCGGCGgcgUGCCcUCGUCGCgGaCCa -3'
miRNA:   3'- gGCgGCCGCa--GCGGuGGCAGCGgC-GG- -5'
10928 5' -64.1 NC_002794.1 + 4289 0.66 0.663167
Target:  5'- aCGCC-GCuUCGCCGaaGcUGCCGCCc -3'
miRNA:   3'- gGCGGcCGcAGCGGUggCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 4339 0.71 0.398318
Target:  5'- gCGCCgGGCGUCGgC-CCG-CGCCucccGCCg -3'
miRNA:   3'- gGCGG-CCGCAGCgGuGGCaGCGG----CGG- -5'
10928 5' -64.1 NC_002794.1 + 4697 0.69 0.515616
Target:  5'- gUCGUaccaCGGCGagGUCAUCGUCGCgcuCGCCc -3'
miRNA:   3'- -GGCG----GCCGCagCGGUGGCAGCG---GCGG- -5'
10928 5' -64.1 NC_002794.1 + 5126 0.67 0.610909
Target:  5'- aCGCa-GCGccCGCCGCCGUCucgacgggggcggcgGCCGCg -3'
miRNA:   3'- gGCGgcCGCa-GCGGUGGCAG---------------CGGCGg -5'
10928 5' -64.1 NC_002794.1 + 5222 0.71 0.380726
Target:  5'- gCCGuagcCCGGCGugugcaggaucacgUCGCgccCGCCG-CGCCGCCg -3'
miRNA:   3'- -GGC----GGCCGC--------------AGCG---GUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 5403 0.68 0.537183
Target:  5'- gUGCgCGGCGUCGCgCccgacgcccacggguGCCccaCGCCGCCc -3'
miRNA:   3'- gGCG-GCCGCAGCG-G---------------UGGca-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 5705 0.66 0.694646
Target:  5'- aCUGCUGGCGgCGgcucuccucgaacacCCGCCG-CGCCaCCu -3'
miRNA:   3'- -GGCGGCCGCaGC---------------GGUGGCaGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 5961 0.73 0.29328
Target:  5'- cCCGCCGucagCGCCGCCGcgCGaCCGCCc -3'
miRNA:   3'- -GGCGGCcgcaGCGGUGGCa-GC-GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 5998 0.83 0.062903
Target:  5'- gCCGUCGGCGUCGUCGCCGcCGaCCgGCCc -3'
miRNA:   3'- -GGCGGCCGCAGCGGUGGCaGC-GG-CGG- -5'
10928 5' -64.1 NC_002794.1 + 6050 0.67 0.616506
Target:  5'- aCC-CCGGCGggcgCGCCACgaUCaaCCGCCa -3'
miRNA:   3'- -GGcGGCCGCa---GCGGUGgcAGc-GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 6202 0.68 0.542624
Target:  5'- -aGCCGGC-UgGCCgaGCgGUCGCCccgGCCg -3'
miRNA:   3'- ggCGGCCGcAgCGG--UGgCAGCGG---CGG- -5'
10928 5' -64.1 NC_002794.1 + 6382 0.67 0.62024
Target:  5'- gCCGCgGGCGUCGUgugcacccagcugggCACC-UCGuguCCGUCg -3'
miRNA:   3'- -GGCGgCCGCAGCG---------------GUGGcAGC---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.