miRNA display CGI


Results 41 - 60 of 584 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 6807 0.69 0.506732
Target:  5'- -gGCUGcGCGUCGCguaCGgCGUCucggGCCGCCg -3'
miRNA:   3'- ggCGGC-CGCAGCG---GUgGCAG----CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7067 0.67 0.635183
Target:  5'- gCgGCCGGCc---CCGCCGagCGCCGUCc -3'
miRNA:   3'- -GgCGGCCGcagcGGUGGCa-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7483 0.66 0.651054
Target:  5'- gCCGagGGCGuucucccgggcuucUCGCCGCagaCGggacCGCCGCCg -3'
miRNA:   3'- -GGCggCCGC--------------AGCGGUG---GCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7521 0.74 0.269187
Target:  5'- nCGCCGGCGgCGCCGucgcgcCCGUCcgGCCGgCg -3'
miRNA:   3'- gGCGGCCGCaGCGGU------GGCAG--CGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 7546 0.82 0.084339
Target:  5'- cCCGUCGuCGUCGUCcUCGUCGCCGCCg -3'
miRNA:   3'- -GGCGGCcGCAGCGGuGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7639 0.77 0.164214
Target:  5'- cUCGUCGuCGUCGUCAUCGUCGUCGUCg -3'
miRNA:   3'- -GGCGGCcGCAGCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7842 0.66 0.68173
Target:  5'- aCGCCcGUcUCGgCGCCcUCGCCGUCc -3'
miRNA:   3'- gGCGGcCGcAGCgGUGGcAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 7944 0.73 0.305945
Target:  5'- cCCGCCGGgcccCGcCGCgACCGUCG-CGUCa -3'
miRNA:   3'- -GGCGGCC----GCaGCGgUGGCAGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8024 0.67 0.613707
Target:  5'- uCgGCuCGGCG-CGCCgagggcucugcccaGCCGcgcgcggcUCGCCGCUa -3'
miRNA:   3'- -GgCG-GCCGCaGCGG--------------UGGC--------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8128 0.73 0.287103
Target:  5'- gCCGCuauaCGGCaccGUCGCCAucuCCGaaCGCCGCCg -3'
miRNA:   3'- -GGCG----GCCG---CAGCGGU---GGCa-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8252 0.67 0.597869
Target:  5'- --nCCGGCGUCGCC-Caga-GCCGCUg -3'
miRNA:   3'- ggcGGCCGCAGCGGuGgcagCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8279 0.83 0.069388
Target:  5'- gCCGUCGGCG-CgGCCGCCGUCGCgaCGCCc -3'
miRNA:   3'- -GGCGGCCGCaG-CGGUGGCAGCG--GCGG- -5'
10928 5' -64.1 NC_002794.1 + 8321 0.8 0.102331
Target:  5'- gCCGCCGcgacCGcCGCCACCGcCGCCGUCg -3'
miRNA:   3'- -GGCGGCc---GCaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8401 0.76 0.192872
Target:  5'- gCCGCuCGGCGUCGCuCGgCGcgCGCCggGCCg -3'
miRNA:   3'- -GGCG-GCCGCAGCG-GUgGCa-GCGG--CGG- -5'
10928 5' -64.1 NC_002794.1 + 8754 0.69 0.501434
Target:  5'- cCCGUCGGUGUCccaGUCGuacacguacacccgcCCGUaGCCGCCc -3'
miRNA:   3'- -GGCGGCCGCAG---CGGU---------------GGCAgCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 8918 0.7 0.446574
Target:  5'- gCCGCCacGGCccccggGCCGCUGgcCGCCGCCu -3'
miRNA:   3'- -GGCGG--CCGcag---CGGUGGCa-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9155 0.67 0.625842
Target:  5'- aCGCgGGCGgugaagaGC--CCGUCGCUGCUa -3'
miRNA:   3'- gGCGgCCGCag-----CGguGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9366 0.68 0.570083
Target:  5'- cCCGgCGGCG-CGCCuCCc-CGCCGUg -3'
miRNA:   3'- -GGCgGCCGCaGCGGuGGcaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 9495 0.84 0.055616
Target:  5'- aCCaGCCGcCGcCGCCGCCGUCGUCGCCg -3'
miRNA:   3'- -GG-CGGCcGCaGCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9586 0.73 0.29578
Target:  5'- aCCGCCuGGCGcggCGgCACCGcggccaggcggccggUCGCCGCg -3'
miRNA:   3'- -GGCGG-CCGCa--GCgGUGGC---------------AGCGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.