miRNA display CGI


Results 61 - 80 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 9770 0.91 0.019021
Target:  5'- uUCGCCgGGCGcuUCGUCGCCGUCGCCGCCg -3'
miRNA:   3'- -GGCGG-CCGC--AGCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9801 0.8 0.102331
Target:  5'- uCC-CCGGUccGUgGCCACCGcCGCCGCCg -3'
miRNA:   3'- -GGcGGCCG--CAgCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9887 0.73 0.305945
Target:  5'- uCCGuucCCGG-GUcCGCCACCGUCuccuCCGCCg -3'
miRNA:   3'- -GGC---GGCCgCA-GCGGUGGCAGc---GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 9931 0.71 0.390606
Target:  5'- aCCGCCGGCcaC-CCGCCaggcUCGCgGCCg -3'
miRNA:   3'- -GGCGGCCGcaGcGGUGGc---AGCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 10099 0.74 0.252183
Target:  5'- gCCGCCGGCGcggccgccCGUCACaCGUCgGCCGgCg -3'
miRNA:   3'- -GGCGGCCGCa-------GCGGUG-GCAG-CGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 10390 0.66 0.672462
Target:  5'- gCCGCgGGCGgcgGCCGCgG-CGaggggaCCGCCu -3'
miRNA:   3'- -GGCGgCCGCag-CGGUGgCaGC------GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 10536 0.72 0.325719
Target:  5'- gUCGCCuccacacccGCGUCGaCCGCuCGcgCGCCGCCg -3'
miRNA:   3'- -GGCGGc--------CGCAGC-GGUG-GCa-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 10601 0.73 0.287103
Target:  5'- gCGCCaGCGgaCGCCGCCGgccgaguggGCCGCCg -3'
miRNA:   3'- gGCGGcCGCa-GCGGUGGCag-------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 10667 0.66 0.672462
Target:  5'- nCgGUCGGCGcggucaUCGCgGCuCG-CGCCGCg -3'
miRNA:   3'- -GgCGGCCGC------AGCGgUG-GCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 10690 0.77 0.175996
Target:  5'- uCCGCCGGCG-CGgCGCgGUCGgCGCg -3'
miRNA:   3'- -GGCGGCCGCaGCgGUGgCAGCgGCGg -5'
10928 5' -64.1 NC_002794.1 + 10930 0.7 0.430122
Target:  5'- -aGCCGGCgGUCGUCcuGCCGcagcugCGCCgGCCc -3'
miRNA:   3'- ggCGGCCG-CAGCGG--UGGCa-----GCGG-CGG- -5'
10928 5' -64.1 NC_002794.1 + 11085 0.67 0.625842
Target:  5'- gCGCCGGC-UCGCU--CGUCGacaCCGUCa -3'
miRNA:   3'- gGCGGCCGcAGCGGugGCAGC---GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11166 0.66 0.678953
Target:  5'- aCGCCGGCGgaggGUCGuCCGUCgGCUcuuccgagcgacagGCCa -3'
miRNA:   3'- gGCGGCCGCag--CGGU-GGCAG-CGG--------------CGG- -5'
10928 5' -64.1 NC_002794.1 + 11286 0.67 0.635183
Target:  5'- gCCGCCgcGGCGgcgGCgGCCacgCGCgGCCg -3'
miRNA:   3'- -GGCGG--CCGCag-CGgUGGca-GCGgCGG- -5'
10928 5' -64.1 NC_002794.1 + 11331 0.8 0.115354
Target:  5'- gCGCgGGCGaCGCCGCCcacCGCCGCCu -3'
miRNA:   3'- gGCGgCCGCaGCGGUGGca-GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11703 0.71 0.375476
Target:  5'- uCCGCCGGCGacggCGUcuccacccgaCACCG-CGgCGCCc -3'
miRNA:   3'- -GGCGGCCGCa---GCG----------GUGGCaGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 11841 0.66 0.653851
Target:  5'- aUCGCCGGC--CGCCACgGcacCGCgCGCa -3'
miRNA:   3'- -GGCGGCCGcaGCGGUGgCa--GCG-GCGg -5'
10928 5' -64.1 NC_002794.1 + 11889 0.74 0.263419
Target:  5'- aCGCUGcgcuccaccGCGUcCGCCACCG-CGCcCGCCa -3'
miRNA:   3'- gGCGGC---------CGCA-GCGGUGGCaGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 11982 0.78 0.136194
Target:  5'- aCCGCCGacacCGCCGCCGUcacCGCCGCCg -3'
miRNA:   3'- -GGCGGCcgcaGCGGUGGCA---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 12030 0.78 0.156757
Target:  5'- aCCGCCucCGUCGCCGacgacaggcucuCCGUCGCgGCCg -3'
miRNA:   3'- -GGCGGccGCAGCGGU------------GGCAGCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.