miRNA display CGI


Results 1 - 20 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 195554 0.66 0.663167
Target:  5'- aCGCCGGgccCGCCccacccccacGCgCG-CGCCGCCg -3'
miRNA:   3'- gGCGGCCgcaGCGG----------UG-GCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 195360 0.67 0.634249
Target:  5'- gUCGCCuggguggGGCGUUGCCuCCGguucuggC-CCGCCc -3'
miRNA:   3'- -GGCGG-------CCGCAGCGGuGGCa------GcGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 195234 0.71 0.368062
Target:  5'- cCCGgugUGGCGuUCGCCucCCGUCcCCGCCg -3'
miRNA:   3'- -GGCg--GCCGC-AGCGGu-GGCAGcGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 194981 0.66 0.672462
Target:  5'- gCgGUCGGCGUgCGCgCggGCCGggugccaaCGCCGCUc -3'
miRNA:   3'- -GgCGGCCGCA-GCG-G--UGGCa-------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 185557 0.73 0.283446
Target:  5'- cCCGUCGGCGagagacuccgacgacUCgGCCGUCGUCGgCGCCg -3'
miRNA:   3'- -GGCGGCCGC---------------AG-CGGUGGCAGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 184072 0.85 0.04563
Target:  5'- aUCGCCgcGGUGUccguggcgccgcCGCCGCCGUCGCCGCCu -3'
miRNA:   3'- -GGCGG--CCGCA------------GCGGUGGCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 184003 0.73 0.287103
Target:  5'- aCCGCCGGCGaCGaCCGCC--CGCC-CCg -3'
miRNA:   3'- -GGCGGCCGCaGC-GGUGGcaGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 183873 0.73 0.31836
Target:  5'- uCCGgCGGCugGUUGCUGCUGUguggacugaugugCGCCGCCg -3'
miRNA:   3'- -GGCgGCCG--CAGCGGUGGCA-------------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 183809 0.71 0.375476
Target:  5'- cCUGCCGGUaUCuCUggGCCG-CGCCGCCg -3'
miRNA:   3'- -GGCGGCCGcAGcGG--UGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 183696 0.86 0.044511
Target:  5'- aUCGcCCGGauCGUCGCCGCCGaCGCCGCCg -3'
miRNA:   3'- -GGC-GGCC--GCAGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 183627 0.79 0.120984
Target:  5'- gCGCCGGCGgCGCCGuCCG-CGgCGCCg -3'
miRNA:   3'- gGCGGCCGCaGCGGU-GGCaGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 183503 0.7 0.438304
Target:  5'- cCCGCgucacguaccuCGGCGugcUCGCCuGCCG-CGCuCGCCu -3'
miRNA:   3'- -GGCG-----------GCCGC---AGCGG-UGGCaGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 183302 0.67 0.635183
Target:  5'- gCUaCCGGCGcaUCGCCAcggucuucCCGuUCGgCGCCu -3'
miRNA:   3'- -GGcGGCCGC--AGCGGU--------GGC-AGCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 182733 0.75 0.215947
Target:  5'- gCCGCgCGGCucgcucgcgcggGUCGUCGCCGUCccauGCCGCa -3'
miRNA:   3'- -GGCG-GCCG------------CAGCGGUGGCAG----CGGCGg -5'
10928 5' -64.1 NC_002794.1 + 182114 0.67 0.60718
Target:  5'- cCCgGCCGGC--CGaCACCagacUCGCCGCCc -3'
miRNA:   3'- -GG-CGGCCGcaGCgGUGGc---AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 182008 0.71 0.365857
Target:  5'- aCCGCCu-CGUCGCCGCCGccgcgacccgguucUCcgagcGCCGCCc -3'
miRNA:   3'- -GGCGGccGCAGCGGUGGC--------------AG-----CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 181717 0.71 0.398318
Target:  5'- aCCGuCCGGUccGUCGUCgaGCCc-CGCCGCCu -3'
miRNA:   3'- -GGC-GGCCG--CAGCGG--UGGcaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 181653 0.66 0.68173
Target:  5'- cCCGCUGGCcgccccaaCGCCACC--CGCCGaCg -3'
miRNA:   3'- -GGCGGCCGca------GCGGUGGcaGCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 181331 0.69 0.505847
Target:  5'- gCCGCucggccaCGGCGcucUCGCCcCCGUCGaCGCg -3'
miRNA:   3'- -GGCG-------GCCGC---AGCGGuGGCAGCgGCGg -5'
10928 5' -64.1 NC_002794.1 + 181209 0.66 0.643588
Target:  5'- aCGCCGGCGcCGCgGcgucgguCCGacUCGCgGCg -3'
miRNA:   3'- gGCGGCCGCaGCGgU-------GGC--AGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.