miRNA display CGI


Results 21 - 40 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 181077 0.68 0.570083
Target:  5'- -gGCCGGCGagGCCGgCGUgaCCGCg -3'
miRNA:   3'- ggCGGCCGCagCGGUgGCAgcGGCGg -5'
10928 5' -64.1 NC_002794.1 + 180656 0.71 0.398318
Target:  5'- aCCGCCcgcgauggcGGCGUC-CC-CCGUCcgcggGCUGCCg -3'
miRNA:   3'- -GGCGG---------CCGCAGcGGuGGCAG-----CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 179374 0.85 0.052936
Target:  5'- gCCGCCGccucCGcCGCCACCGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCc---GCaGCGGUGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 179343 0.82 0.080336
Target:  5'- uCC-CCGGCGUCGCCACCGcCGUCcCCg -3'
miRNA:   3'- -GGcGGCCGCAGCGGUGGCaGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 179313 0.91 0.019021
Target:  5'- uCC-CCGGCGUCGCCACCGccacCGCCGCCg -3'
miRNA:   3'- -GGcGGCCGCAGCGGUGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 179266 0.75 0.22582
Target:  5'- gCCGucuCCGGCGUCGCCACCccCGUCcCCa -3'
miRNA:   3'- -GGC---GGCCGCAGCGGUGGcaGCGGcGG- -5'
10928 5' -64.1 NC_002794.1 + 179172 0.66 0.672462
Target:  5'- gCCGCCaaGUcUCGCuCGCgaGUCGCuCGCCg -3'
miRNA:   3'- -GGCGGc-CGcAGCG-GUGg-CAGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 179128 0.66 0.663167
Target:  5'- gCGCCGGCuccGUC-CCAUC-UUGCCgGCCc -3'
miRNA:   3'- gGCGGCCG---CAGcGGUGGcAGCGG-CGG- -5'
10928 5' -64.1 NC_002794.1 + 179061 0.72 0.325719
Target:  5'- aUCGCCGaCGaCGCCcaGCCGccccCGCCGCCg -3'
miRNA:   3'- -GGCGGCcGCaGCGG--UGGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 178987 0.71 0.375476
Target:  5'- aCCGCCGccGCGgcagcaaCCACCGcCGCCGCg -3'
miRNA:   3'- -GGCGGC--CGCagc----GGUGGCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 178929 0.76 0.185958
Target:  5'- gUCGUCGGCGccgagcCGCCACCGccuccccacgcccucUCGUCGCCg -3'
miRNA:   3'- -GGCGGCCGCa-----GCGGUGGC---------------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 178649 0.73 0.29328
Target:  5'- aCCGCCGcCGccaccacCGCCGCCacCGCCGCCa -3'
miRNA:   3'- -GGCGGCcGCa------GCGGUGGcaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 178605 0.71 0.367326
Target:  5'- aCGgCGGCGacccggcUCGUCAcCCGggcaCGCCGCCg -3'
miRNA:   3'- gGCgGCCGC-------AGCGGU-GGCa---GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 178529 0.76 0.206445
Target:  5'- gCCGCCGGCGUCcCCuCCGacccaCGCCGUg -3'
miRNA:   3'- -GGCGGCCGCAGcGGuGGCa----GCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 178456 0.68 0.542624
Target:  5'- aCCGCCGaagccaccGCGgccaUCGCgGucuCCG-CGCCGCCg -3'
miRNA:   3'- -GGCGGC--------CGC----AGCGgU---GGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 178217 0.79 0.126869
Target:  5'- cCCGCCGccGCGgccgcCGCCACCGccgccacCGCCGCCg -3'
miRNA:   3'- -GGCGGC--CGCa----GCGGUGGCa------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 177810 0.68 0.533565
Target:  5'- cCCGCCGGaucUGCUGCa--CGCCGCCu -3'
miRNA:   3'- -GGCGGCCgcaGCGGUGgcaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 177215 0.8 0.107108
Target:  5'- uCCGCCGGCacccgggacgaccGUCGCCgcuuccucgGCUGcCGCCGCCg -3'
miRNA:   3'- -GGCGGCCG-------------CAGCGG---------UGGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 177106 0.69 0.470181
Target:  5'- aCgGCCGGCGgcaacgacucucuaGCCacgACCGUCGCCaacucgacggccccGCCg -3'
miRNA:   3'- -GgCGGCCGCag------------CGG---UGGCAGCGG--------------CGG- -5'
10928 5' -64.1 NC_002794.1 + 177031 0.72 0.353537
Target:  5'- uCgGCCGGCGcggaggagaccUCGagcgCGCCGUCGCCgaucGCCa -3'
miRNA:   3'- -GgCGGCCGC-----------AGCg---GUGGCAGCGG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.