miRNA display CGI


Results 41 - 60 of 584 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10928 5' -64.1 NC_002794.1 + 176976 0.68 0.579315
Target:  5'- aCGCCGGCGcggagCGUCACCccuccccgaCGgCGCCc -3'
miRNA:   3'- gGCGGCCGCa----GCGGUGGca-------GCgGCGG- -5'
10928 5' -64.1 NC_002794.1 + 176533 0.76 0.192872
Target:  5'- gCGCUGGCGaccCGCgCGCCGgucacccccUCGCCGCCc -3'
miRNA:   3'- gGCGGCCGCa--GCG-GUGGC---------AGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 176363 0.7 0.45493
Target:  5'- aCCGacgaCGGCGgaggucgCGCCGCuCGgagCGCCGgCg -3'
miRNA:   3'- -GGCg---GCCGCa------GCGGUG-GCa--GCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 176315 0.72 0.360022
Target:  5'- cCCGCCGGUGUCGgacCCGgacugcuUCGagGCCGUCa -3'
miRNA:   3'- -GGCGGCCGCAGC---GGU-------GGCagCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 175987 0.66 0.68173
Target:  5'- aCCGUCuacaccuGCGUgGCCgACCGcUGCCGCg -3'
miRNA:   3'- -GGCGGc------CGCAgCGG-UGGCaGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 175699 0.67 0.635183
Target:  5'- gCCGCCuGGCG--GCCccauACCGcgagagccCGCCGCCc -3'
miRNA:   3'- -GGCGG-CCGCagCGG----UGGCa-------GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 175426 0.66 0.663167
Target:  5'- gCGCCGGagGaCGUgCACCGcuggaGCCGCCu -3'
miRNA:   3'- gGCGGCCg-CaGCG-GUGGCag---CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 174486 0.67 0.59415
Target:  5'- gCGgCGGCG--GCCGCCGUCucuuccucggacaCCGCCg -3'
miRNA:   3'- gGCgGCCGCagCGGUGGCAGc------------GGCGG- -5'
10928 5' -64.1 NC_002794.1 + 174419 0.73 0.319024
Target:  5'- aCGUCGgucucGCGUCGCuCGgCGUCGCCGUg -3'
miRNA:   3'- gGCGGC-----CGCAGCG-GUgGCAGCGGCGg -5'
10928 5' -64.1 NC_002794.1 + 174160 0.68 0.560887
Target:  5'- cCCGCCucGGCGUCcacggGCgCugCGUCGCgauCGCg -3'
miRNA:   3'- -GGCGG--CCGCAG-----CG-GugGCAGCG---GCGg -5'
10928 5' -64.1 NC_002794.1 + 173903 0.71 0.371015
Target:  5'- gCCGUCGGCcgcucccgcggcgccGUCGUCuccgcgacCCGUCGCCGgCa -3'
miRNA:   3'- -GGCGGCCG---------------CAGCGGu-------GGCAGCGGCgG- -5'
10928 5' -64.1 NC_002794.1 + 173053 0.68 0.579315
Target:  5'- aCCGCuCGacucacCGUCGUCuuCgCGUCGCCGCUc -3'
miRNA:   3'- -GGCG-GCc-----GCAGCGGu-G-GCAGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 173006 0.68 0.570083
Target:  5'- uCCGaggaucCCGGaCGUCcCgGCCGUCGCgCGCUu -3'
miRNA:   3'- -GGC------GGCC-GCAGcGgUGGCAGCG-GCGG- -5'
10928 5' -64.1 NC_002794.1 + 172961 0.67 0.60718
Target:  5'- cCCGuuGGUGgacggCgGCgACCG-CgGCCGCCa -3'
miRNA:   3'- -GGCggCCGCa----G-CGgUGGCaG-CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 172626 0.7 0.422031
Target:  5'- -aGCCcggGGCGUUGCCgugcgaGCCucCGCCGCCg -3'
miRNA:   3'- ggCGG---CCGCAGCGG------UGGcaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 172384 0.66 0.690963
Target:  5'- gCGgaGGgGUCuGCCAugaUCG-CGCCGCCg -3'
miRNA:   3'- gGCggCCgCAG-CGGU---GGCaGCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 172290 0.66 0.68173
Target:  5'- -gGcCCGGUGcCGCCGCCaccCGCCGauCCa -3'
miRNA:   3'- ggC-GGCCGCaGCGGUGGca-GCGGC--GG- -5'
10928 5' -64.1 NC_002794.1 + 172195 0.69 0.489167
Target:  5'- gCGaCCGGCGgaaagUGUCcCCGaacacgCGCCGCCg -3'
miRNA:   3'- gGC-GGCCGCa----GCGGuGGCa-----GCGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 171878 0.74 0.25607
Target:  5'- -gGCCGGC---GCCACCGUCgcuccguccgacggGCCGCCg -3'
miRNA:   3'- ggCGGCCGcagCGGUGGCAG--------------CGGCGG- -5'
10928 5' -64.1 NC_002794.1 + 171780 0.66 0.644521
Target:  5'- gCGCCcgGGCGggCGUCGCCGUauuaaaGaCCGCg -3'
miRNA:   3'- gGCGG--CCGCa-GCGGUGGCAg-----C-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.