Results 41 - 60 of 584 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10928 | 5' | -64.1 | NC_002794.1 | + | 74602 | 0.66 | 0.690963 |
Target: 5'- gCCGCCgcGGCcUCGgCACCGUC-CUGgCu -3' miRNA: 3'- -GGCGG--CCGcAGCgGUGGCAGcGGCgG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 45567 | 0.66 | 0.690963 |
Target: 5'- gCGCCGGUGUgGUggcagcggauCACCG--GCCGCg -3' miRNA: 3'- gGCGGCCGCAgCG----------GUGGCagCGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 43282 | 0.66 | 0.690963 |
Target: 5'- aCCGCCgcGGCGgcCGCCA-CGUCcCUGCg -3' miRNA: 3'- -GGCGG--CCGCa-GCGGUgGCAGcGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 20444 | 0.66 | 0.690963 |
Target: 5'- aCGCCGGUGagcgaUGCCGCgGcgcagacgaUCGUCGUCg -3' miRNA: 3'- gGCGGCCGCa----GCGGUGgC---------AGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 121920 | 0.66 | 0.694646 |
Target: 5'- gCCGCCGaacgcuuccuggccaGCucuuUCGaCGCC-UCGCCGCCg -3' miRNA: 3'- -GGCGGC---------------CGc---AGCgGUGGcAGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 108968 | 0.66 | 0.68173 |
Target: 5'- cCCGaucCCGGCGggGCCGCCGaccCGgugaCGCCc -3' miRNA: 3'- -GGC---GGCCGCagCGGUGGCa--GCg---GCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 18944 | 0.66 | 0.68173 |
Target: 5'- uUGCCgGGUGUgGUugguuCAUCGUgGCCGCUg -3' miRNA: 3'- gGCGG-CCGCAgCG-----GUGGCAgCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 11166 | 0.66 | 0.678953 |
Target: 5'- aCGCCGGCGgaggGUCGuCCGUCgGCUcuuccgagcgacagGCCa -3' miRNA: 3'- gGCGGCCGCag--CGGU-GGCAG-CGG--------------CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 123857 | 0.66 | 0.678953 |
Target: 5'- aCCGCCGgaGCucgaggaagccgagGUCGCgcaGCCGcuugagcuguUCGCCGCUg -3' miRNA: 3'- -GGCGGC--CG--------------CAGCGg--UGGC----------AGCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 175987 | 0.66 | 0.68173 |
Target: 5'- aCCGUCuacaccuGCGUgGCCgACCGcUGCCGCg -3' miRNA: 3'- -GGCGGc------CGCAgCGG-UGGCaGCGGCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 96889 | 0.66 | 0.68173 |
Target: 5'- gCCGUCGGCGgCGCCgugGCCucgGUgGUCGgCg -3' miRNA: 3'- -GGCGGCCGCaGCGG---UGG---CAgCGGCgG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 119407 | 0.66 | 0.68173 |
Target: 5'- cCCG-UGGCGccCGCCccuccACCGUCcGCCgGCCc -3' miRNA: 3'- -GGCgGCCGCa-GCGG-----UGGCAG-CGG-CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 172290 | 0.66 | 0.68173 |
Target: 5'- -gGcCCGGUGcCGCCGCCaccCGCCGauCCa -3' miRNA: 3'- ggC-GGCCGCaGCGGUGGca-GCGGC--GG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 181653 | 0.66 | 0.68173 |
Target: 5'- cCCGCUGGCcgccccaaCGCCACC--CGCCGaCg -3' miRNA: 3'- -GGCGGCCGca------GCGGUGGcaGCGGCgG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 69313 | 0.66 | 0.68173 |
Target: 5'- aCUGaCCGGgaacacCGUCGCCGCgGcggUGCUGCUg -3' miRNA: 3'- -GGC-GGCC------GCAGCGGUGgCa--GCGGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 132543 | 0.66 | 0.68173 |
Target: 5'- aCCGauCCGGCGggggGCCcgagcgcggACCgGUCGCuCGCCc -3' miRNA: 3'- -GGC--GGCCGCag--CGG---------UGG-CAGCG-GCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 140331 | 0.66 | 0.68173 |
Target: 5'- cCCGgCGGCcccGUCGCCcucCCGuUUGCUcuuGCCg -3' miRNA: 3'- -GGCgGCCG---CAGCGGu--GGC-AGCGG---CGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 69257 | 0.66 | 0.68173 |
Target: 5'- gCGCCgaGGCcggCGCCGaCGUCGCgGCg -3' miRNA: 3'- gGCGG--CCGca-GCGGUgGCAGCGgCGg -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 1859 | 0.66 | 0.68173 |
Target: 5'- nCC-CCGGCuUCGCCuuCG-CGgCCGCCn -3' miRNA: 3'- -GGcGGCCGcAGCGGugGCaGC-GGCGG- -5' |
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10928 | 5' | -64.1 | NC_002794.1 | + | 7842 | 0.66 | 0.68173 |
Target: 5'- aCGCCcGUcUCGgCGCCcUCGCCGUCc -3' miRNA: 3'- gGCGGcCGcAGCgGUGGcAGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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