miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10930 3' -59.8 NC_002794.1 + 169212 0.66 0.843678
Target:  5'- cCGGACGGcggCCggcUCGucGGCGGGGUg--- -3'
miRNA:   3'- -GCCUGCCaa-GG---AGC--CCGCCCCAagac -5'
10930 3' -59.8 NC_002794.1 + 183980 0.66 0.843678
Target:  5'- cCGcGACGGgUCCUCGaGCG-GGUUCg- -3'
miRNA:   3'- -GC-CUGCCaAGGAGCcCGCcCCAAGac -5'
10930 3' -59.8 NC_002794.1 + 57373 0.66 0.835939
Target:  5'- uCGG-CGG-UCC-C-GGCGGGGUUCa- -3'
miRNA:   3'- -GCCuGCCaAGGaGcCCGCCCCAAGac -5'
10930 3' -59.8 NC_002794.1 + 108601 0.66 0.831216
Target:  5'- cCGGGCGGgugggggugcaggCCgggCGGGUGGGGg---- -3'
miRNA:   3'- -GCCUGCCaa-----------GGa--GCCCGCCCCaagac -5'
10930 3' -59.8 NC_002794.1 + 83514 0.66 0.828034
Target:  5'- cCGG-CGGcgCCggcggCgGGGCGGGGagCUGc -3'
miRNA:   3'- -GCCuGCCaaGGa----G-CCCGCCCCaaGAC- -5'
10930 3' -59.8 NC_002794.1 + 108727 0.66 0.815056
Target:  5'- cCGGGCGGgugggggugcaggCCgggCGGGUGGGGgugCa- -3'
miRNA:   3'- -GCCUGCCaa-----------GGa--GCCCGCCCCaa-Gac -5'
10930 3' -59.8 NC_002794.1 + 108769 0.66 0.815056
Target:  5'- cCGGGCGGgugggggugcaggCCgggCGGGUGGGGgugCa- -3'
miRNA:   3'- -GCCUGCCaa-----------GGa--GCCCGCCCCaa-Gac -5'
10930 3' -59.8 NC_002794.1 + 108685 0.66 0.815056
Target:  5'- cCGGGCGGgugggggugcaggCCgggCGGGUGGGGgugCa- -3'
miRNA:   3'- -GCCUGCCaa-----------GGa--GCCCGCCCCaa-Gac -5'
10930 3' -59.8 NC_002794.1 + 108643 0.66 0.815056
Target:  5'- cCGGGCGGgugggggugcaggCCgggCGGGUGGGGgugCa- -3'
miRNA:   3'- -GCCUGCCaa-----------GGa--GCCCGCCCCaa-Gac -5'
10930 3' -59.8 NC_002794.1 + 104824 0.67 0.803385
Target:  5'- uGGGCGGc-CCUCGGGguggaCGGGGcgCg- -3'
miRNA:   3'- gCCUGCCaaGGAGCCC-----GCCCCaaGac -5'
10930 3' -59.8 NC_002794.1 + 157991 0.67 0.803385
Target:  5'- cCGGuCGGcgUCUCGGGCGGcGGgggCg- -3'
miRNA:   3'- -GCCuGCCaaGGAGCCCGCC-CCaa-Gac -5'
10930 3' -59.8 NC_002794.1 + 188031 0.67 0.79488
Target:  5'- aGGGgGGgccgUCCaUCGGGaCGGGGggUCa- -3'
miRNA:   3'- gCCUgCCa---AGG-AGCCC-GCCCCa-AGac -5'
10930 3' -59.8 NC_002794.1 + 98981 0.68 0.72273
Target:  5'- aCGGACGGUggcgCUacggggcaggcgUCGGGCGGaGGUg--- -3'
miRNA:   3'- -GCCUGCCAa---GG------------AGCCCGCC-CCAagac -5'
10930 3' -59.8 NC_002794.1 + 13542 0.68 0.713314
Target:  5'- gCGGACGGgcggUCGGGCGGGcGggCg- -3'
miRNA:   3'- -GCCUGCCaaggAGCCCGCCC-CaaGac -5'
10930 3' -59.8 NC_002794.1 + 94261 0.69 0.665454
Target:  5'- gGGGCGGgugCCggcccgcCGGGCGGGGg---- -3'
miRNA:   3'- gCCUGCCaa-GGa------GCCCGCCCCaagac -5'
10930 3' -59.8 NC_002794.1 + 195407 0.69 0.65578
Target:  5'- cCGGGgGGaugUCUUUGGGgGGGGUUUg- -3'
miRNA:   3'- -GCCUgCCa--AGGAGCCCgCCCCAAGac -5'
10930 3' -59.8 NC_002794.1 + 16812 0.71 0.549709
Target:  5'- aCGGAaGGUUCUUCGGuC-GGGUUCUGg -3'
miRNA:   3'- -GCCUgCCAAGGAGCCcGcCCCAAGAC- -5'
10930 3' -59.8 NC_002794.1 + 142029 0.72 0.493921
Target:  5'- uCGG-CGGgagCCUCGacgggcgucucGGCGGGGUUCUc -3'
miRNA:   3'- -GCCuGCCaa-GGAGC-----------CCGCCCCAAGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.