miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10930 5' -52.2 NC_002794.1 + 12231 0.66 0.996335
Target:  5'- cCCCGcGccCCCGACuCGAgcAGGGCCgccuucUCCg -3'
miRNA:   3'- -GGGU-CuuGGGCUG-GCU--UCUUGGa-----AGG- -5'
10930 5' -52.2 NC_002794.1 + 194523 0.66 0.996335
Target:  5'- cCCCGGGuccgaagagacGCCUGAaCGggGGGCgUguUCCg -3'
miRNA:   3'- -GGGUCU-----------UGGGCUgGCuuCUUGgA--AGG- -5'
10930 5' -52.2 NC_002794.1 + 126048 0.66 0.996335
Target:  5'- gCCCGccGCCgCGACCGgcGuccGCCcggUCCg -3'
miRNA:   3'- -GGGUcuUGG-GCUGGCuuCu--UGGa--AGG- -5'
10930 5' -52.2 NC_002794.1 + 81498 0.66 0.996335
Target:  5'- gCCAGGG-CCGGCUGcAGGGCCgcguaggCCu -3'
miRNA:   3'- gGGUCUUgGGCUGGCuUCUUGGaa-----GG- -5'
10930 5' -52.2 NC_002794.1 + 125884 0.66 0.996335
Target:  5'- gCCCAGAuACCCGuggguguaCGAGGucgcGCCgaCCg -3'
miRNA:   3'- -GGGUCU-UGGGCug------GCUUCu---UGGaaGG- -5'
10930 5' -52.2 NC_002794.1 + 15200 0.66 0.996335
Target:  5'- gCgCAGGGCgUG-CCGggGAACUcgCCg -3'
miRNA:   3'- -GgGUCUUGgGCuGGCuuCUUGGaaGG- -5'
10930 5' -52.2 NC_002794.1 + 13846 0.66 0.996335
Target:  5'- gCCCGGGAcCCCGgcguccgggccGCCGgcGAccagACCaggUCCu -3'
miRNA:   3'- -GGGUCUU-GGGC-----------UGGCuuCU----UGGa--AGG- -5'
10930 5' -52.2 NC_002794.1 + 11366 0.66 0.996335
Target:  5'- cCCCGGAcGCCCGGgCGGcgcGGGCC--CCg -3'
miRNA:   3'- -GGGUCU-UGGGCUgGCUu--CUUGGaaGG- -5'
10930 5' -52.2 NC_002794.1 + 61534 0.66 0.996335
Target:  5'- gCCGGAucuCCCGACCuucgcccGGAucaccACCUUCa -3'
miRNA:   3'- gGGUCUu--GGGCUGGcu-----UCU-----UGGAAGg -5'
10930 5' -52.2 NC_002794.1 + 43879 0.66 0.996335
Target:  5'- gCCCGGGacguggucuaccGCCCGAUCGuGGucauCCagUUCCg -3'
miRNA:   3'- -GGGUCU------------UGGGCUGGCuUCuu--GG--AAGG- -5'
10930 5' -52.2 NC_002794.1 + 143172 0.66 0.995982
Target:  5'- gCCAGGAaacggcgcagaaacuCCCGGCCGugauAGAGCgUggucugCCg -3'
miRNA:   3'- gGGUCUU---------------GGGCUGGCu---UCUUGgAa-----GG- -5'
10930 5' -52.2 NC_002794.1 + 154180 0.66 0.995732
Target:  5'- gCCgCAGGagcGCCCgGACCGccGGAUCgUCCc -3'
miRNA:   3'- -GG-GUCU---UGGG-CUGGCuuCUUGGaAGG- -5'
10930 5' -52.2 NC_002794.1 + 42305 0.66 0.995732
Target:  5'- cCCCAcggcGAAUauaCGAUCGAGGAcgaagaucGCCgggUCCa -3'
miRNA:   3'- -GGGU----CUUGg--GCUGGCUUCU--------UGGa--AGG- -5'
10930 5' -52.2 NC_002794.1 + 47784 0.66 0.995732
Target:  5'- gCCGGGagugGCCuCGAgCGAGGAGCagcugCCg -3'
miRNA:   3'- gGGUCU----UGG-GCUgGCUUCUUGgaa--GG- -5'
10930 5' -52.2 NC_002794.1 + 80023 0.66 0.995332
Target:  5'- -gCGGGGCCCGGCgGGcucGGGCCUgggacgcgcgaggggUCCg -3'
miRNA:   3'- ggGUCUUGGGCUGgCUu--CUUGGA---------------AGG- -5'
10930 5' -52.2 NC_002794.1 + 106283 0.66 0.99505
Target:  5'- uCCCGGugucaUCGGCCGucGAGCCgcgcgaUCCc -3'
miRNA:   3'- -GGGUCuug--GGCUGGCuuCUUGGa-----AGG- -5'
10930 5' -52.2 NC_002794.1 + 70462 0.66 0.99505
Target:  5'- gCC-GAGCCCG-UCGAGGcGCCgcCCa -3'
miRNA:   3'- gGGuCUUGGGCuGGCUUCuUGGaaGG- -5'
10930 5' -52.2 NC_002794.1 + 9171 0.66 0.99505
Target:  5'- gUCCAGGAUCaCGACgacgcgggcggUGAAGAGCCcgUCg -3'
miRNA:   3'- -GGGUCUUGG-GCUG-----------GCUUCUUGGa-AGg -5'
10930 5' -52.2 NC_002794.1 + 65853 0.66 0.99505
Target:  5'- cCCCGGAgcgugcgggucgGCCUcGCgCGAGGAGCg-UCCg -3'
miRNA:   3'- -GGGUCU------------UGGGcUG-GCUUCUUGgaAGG- -5'
10930 5' -52.2 NC_002794.1 + 41521 0.66 0.99505
Target:  5'- uCCCGGGugCCGcgGCCGAGcucCCgcgcggUCCa -3'
miRNA:   3'- -GGGUCUugGGC--UGGCUUcuuGGa-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.