miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10930 5' -52.2 NC_002794.1 + 70462 0.66 0.99505
Target:  5'- gCC-GAGCCCG-UCGAGGcGCCgcCCa -3'
miRNA:   3'- gGGuCUUGGGCuGGCUUCuUGGaaGG- -5'
10930 5' -52.2 NC_002794.1 + 9171 0.66 0.99505
Target:  5'- gUCCAGGAUCaCGACgacgcgggcggUGAAGAGCCcgUCg -3'
miRNA:   3'- -GGGUCUUGG-GCUG-----------GCUUCUUGGa-AGg -5'
10930 5' -52.2 NC_002794.1 + 65853 0.66 0.99505
Target:  5'- cCCCGGAgcgugcgggucgGCCUcGCgCGAGGAGCg-UCCg -3'
miRNA:   3'- -GGGUCU------------UGGGcUG-GCUUCUUGgaAGG- -5'
10930 5' -52.2 NC_002794.1 + 168462 0.66 0.99505
Target:  5'- aCCGGAugaccGCUCGACCGGcc-GCCcgcgUCCg -3'
miRNA:   3'- gGGUCU-----UGGGCUGGCUucuUGGa---AGG- -5'
10930 5' -52.2 NC_002794.1 + 2376 0.66 0.994829
Target:  5'- cCCCAGGcacaacaguucGCCCGcgugccacuccaccGCCGcgcGcACCUUCCg -3'
miRNA:   3'- -GGGUCU-----------UGGGC--------------UGGCuu-CuUGGAAGG- -5'
10930 5' -52.2 NC_002794.1 + 78827 0.66 0.994282
Target:  5'- aCCCcGggUCCGACagcaCGAGGuacgGGCCgUCCg -3'
miRNA:   3'- -GGGuCuuGGGCUG----GCUUC----UUGGaAGG- -5'
10930 5' -52.2 NC_002794.1 + 181709 0.66 0.994282
Target:  5'- gUCCGucgucGAGCCCcGCCGccuGAACCUgcgCCu -3'
miRNA:   3'- -GGGU-----CUUGGGcUGGCuu-CUUGGAa--GG- -5'
10930 5' -52.2 NC_002794.1 + 149283 0.66 0.99342
Target:  5'- cCCCuc-ACCCGACacgCGAcccuGAACCUgUCCg -3'
miRNA:   3'- -GGGucuUGGGCUG---GCUu---CUUGGA-AGG- -5'
10930 5' -52.2 NC_002794.1 + 137771 0.66 0.99342
Target:  5'- gCCCGGcgcccgcGCUCGACCGcuGcgUCUUCCc -3'
miRNA:   3'- -GGGUCu------UGGGCUGGCuuCuuGGAAGG- -5'
10930 5' -52.2 NC_002794.1 + 111127 0.66 0.993329
Target:  5'- cCCCcGAccgacggcaacGCCaCGACCGGccgcgagAGGGCCgUCCg -3'
miRNA:   3'- -GGGuCU-----------UGG-GCUGGCU-------UCUUGGaAGG- -5'
10930 5' -52.2 NC_002794.1 + 166026 0.67 0.992855
Target:  5'- gUCCGGggUCgugcagggggcaggaCGAUCGAGGAAUCgUCCc -3'
miRNA:   3'- -GGGUCuuGG---------------GCUGGCUUCUUGGaAGG- -5'
10930 5' -52.2 NC_002794.1 + 111549 0.67 0.992458
Target:  5'- uCCUGGcGACCgGGCCGcccGAGAGCCg-CCu -3'
miRNA:   3'- -GGGUC-UUGGgCUGGC---UUCUUGGaaGG- -5'
10930 5' -52.2 NC_002794.1 + 75577 0.67 0.992458
Target:  5'- gCUGGAGCUCGagcacGCCGAgcccGGGGCCUUgCu -3'
miRNA:   3'- gGGUCUUGGGC-----UGGCU----UCUUGGAAgG- -5'
10930 5' -52.2 NC_002794.1 + 192437 0.67 0.992458
Target:  5'- aCCCGG-GCCCGACCc---GGCCccUCCu -3'
miRNA:   3'- -GGGUCuUGGGCUGGcuucUUGGa-AGG- -5'
10930 5' -52.2 NC_002794.1 + 69213 0.67 0.992458
Target:  5'- gCCCGGAcgcGCCgagaGACCGAcGGGCCg--- -3'
miRNA:   3'- -GGGUCU---UGGg---CUGGCUuCUUGGaagg -5'
10930 5' -52.2 NC_002794.1 + 167193 0.67 0.992458
Target:  5'- cCCCGGAACCgCcGCCGGu-GGCCgucgCCg -3'
miRNA:   3'- -GGGUCUUGG-GcUGGCUucUUGGaa--GG- -5'
10930 5' -52.2 NC_002794.1 + 181107 0.67 0.992458
Target:  5'- aUCGGAGCCCGaaGCCGucGAgGCCgcugaggCCg -3'
miRNA:   3'- gGGUCUUGGGC--UGGCuuCU-UGGaa-----GG- -5'
10930 5' -52.2 NC_002794.1 + 45693 0.67 0.991387
Target:  5'- gCCGGcuuGCCaGACCGGcaGACCUUCg -3'
miRNA:   3'- gGGUCu--UGGgCUGGCUucUUGGAAGg -5'
10930 5' -52.2 NC_002794.1 + 9825 0.67 0.991387
Target:  5'- aCCCGGGcCCCGGCUGGccguCgUUCCc -3'
miRNA:   3'- -GGGUCUuGGGCUGGCUucuuGgAAGG- -5'
10930 5' -52.2 NC_002794.1 + 118565 0.67 0.991387
Target:  5'- aUCCGGcugcuGCCCGACCGccacGAacGCCUgCCc -3'
miRNA:   3'- -GGGUCu----UGGGCUGGCuu--CU--UGGAaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.