miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10931 5' -57.8 NC_002794.1 + 174504 0.66 0.915854
Target:  5'- gCCAACCGaaCCagagacgcggcggcgGCCGCCGUcucuuccucggacaCCGCCGGc -3'
miRNA:   3'- aGGUUGGCa-GG---------------UGGUGGCA--------------GGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 180452 0.66 0.915854
Target:  5'- cCUGGCCGccaucgagugCCACCACCGgaugauucccaacggCCACUGGg -3'
miRNA:   3'- aGGUUGGCa---------GGUGGUGGCa--------------GGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 134569 0.66 0.915296
Target:  5'- gUCCGcGCCG-CCACCGCCcagcUCCggaccauccacuACCGAg -3'
miRNA:   3'- -AGGU-UGGCaGGUGGUGGc---AGG------------UGGCU- -5'
10931 5' -57.8 NC_002794.1 + 177002 0.66 0.915296
Target:  5'- gCCGucGCCGaUCGCCAaCG-CCACCGAc -3'
miRNA:   3'- aGGU--UGGCaGGUGGUgGCaGGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 7272 0.66 0.915296
Target:  5'- gCCcGCCGcUCCACgGCCGcCUugCGc -3'
miRNA:   3'- aGGuUGGC-AGGUGgUGGCaGGugGCu -5'
10931 5' -57.8 NC_002794.1 + 147576 0.66 0.915296
Target:  5'- cUCC-GCCGUCCGaaggaGCUcgaggcucgaGUCCACCGGc -3'
miRNA:   3'- -AGGuUGGCAGGUgg---UGG----------CAGGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 125313 0.66 0.915296
Target:  5'- gCCGAUCGUgCGCCucgaGCCGcUCCagaucgcucuGCCGAg -3'
miRNA:   3'- aGGUUGGCAgGUGG----UGGC-AGG----------UGGCU- -5'
10931 5' -57.8 NC_002794.1 + 114545 0.66 0.915296
Target:  5'- aCCucCCGUCgGCCaaGCCGcgguacgcUCCGCCGu -3'
miRNA:   3'- aGGuuGGCAGgUGG--UGGC--------AGGUGGCu -5'
10931 5' -57.8 NC_002794.1 + 45837 0.66 0.914736
Target:  5'- cUCCGAgacCCGgCCGCCgaguggaGCCG-CUACCGAc -3'
miRNA:   3'- -AGGUU---GGCaGGUGG-------UGGCaGGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 73721 0.66 0.909598
Target:  5'- aCCGACCGUUucaCGCCGgCCGugUCCgacuaccugGCCGAg -3'
miRNA:   3'- aGGUUGGCAG---GUGGU-GGC--AGG---------UGGCU- -5'
10931 5' -57.8 NC_002794.1 + 67814 0.66 0.909598
Target:  5'- gCC-ACCGaUCACCG-CGUCgCACCGAc -3'
miRNA:   3'- aGGuUGGCaGGUGGUgGCAG-GUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 6263 0.66 0.909598
Target:  5'- cCCuuagcCCGUCCGCCcgagacccGCCGacUCgGCCGAc -3'
miRNA:   3'- aGGuu---GGCAGGUGG--------UGGC--AGgUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 5874 0.66 0.909598
Target:  5'- cCCGACgGUCCGuCCGg-GUCCAUCGGc -3'
miRNA:   3'- aGGUUGgCAGGU-GGUggCAGGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 172613 0.66 0.903682
Target:  5'- gCCGugCGagccUCCGCCGCCGga-ACCGu -3'
miRNA:   3'- aGGUugGC----AGGUGGUGGCaggUGGCu -5'
10931 5' -57.8 NC_002794.1 + 132152 0.66 0.903682
Target:  5'- -aCGgcGCCGg-CGCCGCCGgaCCGCCGAu -3'
miRNA:   3'- agGU--UGGCagGUGGUGGCa-GGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 96049 0.66 0.903682
Target:  5'- -gCGGgCG-CCGgCGCCGUCgGCCGAc -3'
miRNA:   3'- agGUUgGCaGGUgGUGGCAGgUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 4318 0.66 0.901865
Target:  5'- cUCCcGCCGcagucggguccgggUCCACgaCGCCGcUUCGCCGAa -3'
miRNA:   3'- -AGGuUGGC--------------AGGUG--GUGGC-AGGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 105358 0.66 0.89755
Target:  5'- aUCGGCCGUCC-CCGCCG-CgCGCUu- -3'
miRNA:   3'- aGGUUGGCAGGuGGUGGCaG-GUGGcu -5'
10931 5' -57.8 NC_002794.1 + 113294 0.66 0.89755
Target:  5'- cCCAGCCGg-CGagGCCGacgCCGCCGAg -3'
miRNA:   3'- aGGUUGGCagGUggUGGCa--GGUGGCU- -5'
10931 5' -57.8 NC_002794.1 + 99185 0.66 0.89755
Target:  5'- cUCAAUgGggCCGCCGCCcccccUCCGCCGGc -3'
miRNA:   3'- aGGUUGgCa-GGUGGUGGc----AGGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.