miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 113020 0.66 0.977123
Target:  5'- aCGGCGaG-CGCGAgcgcGAGCgCGACCGCGa -3'
miRNA:   3'- aGUCGC-CgGUGCUa---CUUG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 118894 0.66 0.977123
Target:  5'- cCGGcCGGCC-CGccGAGCuCGACCugGu -3'
miRNA:   3'- aGUC-GCCGGuGCuaCUUG-GUUGGugU- -5'
10933 5' -54 NC_002794.1 + 147160 0.66 0.977123
Target:  5'- aUCAcGuCGGCCcaguacucgguGCGcgGAuccgACCGGCCGCAa -3'
miRNA:   3'- -AGU-C-GCCGG-----------UGCuaCU----UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 164806 0.66 0.977123
Target:  5'- gCAGCGG-CACGgcG-GCCAGCuCGCGc -3'
miRNA:   3'- aGUCGCCgGUGCuaCuUGGUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 195847 0.66 0.976882
Target:  5'- --cGCGGCCGCGAacacGAaaacgagGCC-GCCGCGg -3'
miRNA:   3'- aguCGCCGGUGCUa---CU-------UGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 137427 0.66 0.974622
Target:  5'- cCAGacgccgaGGCCACGcUGcGCCuGGCCGCGc -3'
miRNA:   3'- aGUCg------CCGGUGCuACuUGG-UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 189272 0.66 0.974622
Target:  5'- gUCAccGCcGCCaugcucGCGGgccgGAACCAGCCACGc -3'
miRNA:   3'- -AGU--CGcCGG------UGCUa---CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 76074 0.66 0.974622
Target:  5'- -aGGCGGCUcCGGUccGCCGACUugAg -3'
miRNA:   3'- agUCGCCGGuGCUAcuUGGUUGGugU- -5'
10933 5' -54 NC_002794.1 + 152819 0.66 0.974622
Target:  5'- aUCGcGCGG-CAgGccGAGCCGGCCACc -3'
miRNA:   3'- -AGU-CGCCgGUgCuaCUUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 137802 0.66 0.974622
Target:  5'- gUCGGCGGCCccggcgGCGGcgGGACgGGCgGCc -3'
miRNA:   3'- -AGUCGCCGG------UGCUa-CUUGgUUGgUGu -5'
10933 5' -54 NC_002794.1 + 173930 0.66 0.974622
Target:  5'- aCGGCGGCgGCGcgGcgcucgucgaaGGCCGucgGCCGCu -3'
miRNA:   3'- aGUCGCCGgUGCuaC-----------UUGGU---UGGUGu -5'
10933 5' -54 NC_002794.1 + 157422 0.66 0.974622
Target:  5'- gCGGCgGGCCGgacUGAgGAGCCGgcgcgGCCGCGg -3'
miRNA:   3'- aGUCG-CCGGU---GCUaCUUGGU-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 59421 0.66 0.973835
Target:  5'- gCGGCGGCUGCGuccgcuguUGggUCAggucggcgagguucGCCGCGu -3'
miRNA:   3'- aGUCGCCGGUGCu-------ACuuGGU--------------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 105100 0.66 0.971928
Target:  5'- gUCcGUGGCCAucgcgccgcugcUGGUGGACCugacggucGACCGCGa -3'
miRNA:   3'- -AGuCGCCGGU------------GCUACUUGG--------UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 46161 0.66 0.971928
Target:  5'- gCGGgGGCCGCcuggcgGGUGGGCCGccugccucGCUACGg -3'
miRNA:   3'- aGUCgCCGGUG------CUACUUGGU--------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 75800 0.66 0.971928
Target:  5'- -uGGCGGCCGCGGa-GGCCGA-CGCg -3'
miRNA:   3'- agUCGCCGGUGCUacUUGGUUgGUGu -5'
10933 5' -54 NC_002794.1 + 138951 0.66 0.971928
Target:  5'- --cGUGGCCACGGgcgccgGGcuGCCGGCCucGCAc -3'
miRNA:   3'- aguCGCCGGUGCUa-----CU--UGGUUGG--UGU- -5'
10933 5' -54 NC_002794.1 + 100016 0.66 0.971928
Target:  5'- gCGGCGGCCggggagGCGgcGGGCgGGCCGu- -3'
miRNA:   3'- aGUCGCCGG------UGCuaCUUGgUUGGUgu -5'
10933 5' -54 NC_002794.1 + 79930 0.66 0.971928
Target:  5'- --cGCGGCgGCGGgccGGCCcGCCGCGu -3'
miRNA:   3'- aguCGCCGgUGCUac-UUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 149807 0.66 0.971928
Target:  5'- -gAGCGGUcguuucacaCACGGUcaGAGCCAucuCCACGg -3'
miRNA:   3'- agUCGCCG---------GUGCUA--CUUGGUu--GGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.