Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10933 | 5' | -54 | NC_002794.1 | + | 149807 | 0.66 | 0.971928 |
Target: 5'- -gAGCGGUcguuucacaCACGGUcaGAGCCAucuCCACGg -3' miRNA: 3'- agUCGCCG---------GUGCUA--CUUGGUu--GGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 159446 | 0.66 | 0.971928 |
Target: 5'- gUAGCGGCgGCuGAUGAagcggaagACCAGgCGCc -3' miRNA: 3'- aGUCGCCGgUG-CUACU--------UGGUUgGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 59421 | 0.66 | 0.973835 |
Target: 5'- gCGGCGGCUGCGuccgcuguUGggUCAggucggcgagguucGCCGCGu -3' miRNA: 3'- aGUCGCCGGUGCu-------ACuuGGU--------------UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 79930 | 0.66 | 0.971928 |
Target: 5'- --cGCGGCgGCGGgccGGCCcGCCGCGu -3' miRNA: 3'- aguCGCCGgUGCUac-UUGGuUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 100016 | 0.66 | 0.971928 |
Target: 5'- gCGGCGGCCggggagGCGgcGGGCgGGCCGu- -3' miRNA: 3'- aGUCGCCGG------UGCuaCUUGgUUGGUgu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 138951 | 0.66 | 0.971928 |
Target: 5'- --cGUGGCCACGGgcgccgGGcuGCCGGCCucGCAc -3' miRNA: 3'- aguCGCCGGUGCUa-----CU--UGGUUGG--UGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 75800 | 0.66 | 0.971928 |
Target: 5'- -uGGCGGCCGCGGa-GGCCGA-CGCg -3' miRNA: 3'- agUCGCCGGUGCUacUUGGUUgGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 46161 | 0.66 | 0.971928 |
Target: 5'- gCGGgGGCCGCcuggcgGGUGGGCCGccugccucGCUACGg -3' miRNA: 3'- aGUCgCCGGUG------CUACUUGGU--------UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 105100 | 0.66 | 0.971928 |
Target: 5'- gUCcGUGGCCAucgcgccgcugcUGGUGGACCugacggucGACCGCGa -3' miRNA: 3'- -AGuCGCCGGU------------GCUACUUGG--------UUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 137427 | 0.66 | 0.974622 |
Target: 5'- cCAGacgccgaGGCCACGcUGcGCCuGGCCGCGc -3' miRNA: 3'- aGUCg------CCGGUGCuACuUGG-UUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 189272 | 0.66 | 0.974622 |
Target: 5'- gUCAccGCcGCCaugcucGCGGgccgGAACCAGCCACGc -3' miRNA: 3'- -AGU--CGcCGG------UGCUa---CUUGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 76074 | 0.66 | 0.974622 |
Target: 5'- -aGGCGGCUcCGGUccGCCGACUugAg -3' miRNA: 3'- agUCGCCGGuGCUAcuUGGUUGGugU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 118894 | 0.66 | 0.977123 |
Target: 5'- cCGGcCGGCC-CGccGAGCuCGACCugGu -3' miRNA: 3'- aGUC-GCCGGuGCuaCUUG-GUUGGugU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 147160 | 0.66 | 0.977123 |
Target: 5'- aUCAcGuCGGCCcaguacucgguGCGcgGAuccgACCGGCCGCAa -3' miRNA: 3'- -AGU-C-GCCGG-----------UGCuaCU----UGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 195847 | 0.66 | 0.976882 |
Target: 5'- --cGCGGCCGCGAacacGAaaacgagGCC-GCCGCGg -3' miRNA: 3'- aguCGCCGGUGCUa---CU-------UGGuUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 164806 | 0.66 | 0.977123 |
Target: 5'- gCAGCGG-CACGgcG-GCCAGCuCGCGc -3' miRNA: 3'- aGUCGCCgGUGCuaCuUGGUUG-GUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 157422 | 0.66 | 0.974622 |
Target: 5'- gCGGCgGGCCGgacUGAgGAGCCGgcgcgGCCGCGg -3' miRNA: 3'- aGUCG-CCGGU---GCUaCUUGGU-----UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 173930 | 0.66 | 0.974622 |
Target: 5'- aCGGCGGCgGCGcgGcgcucgucgaaGGCCGucgGCCGCu -3' miRNA: 3'- aGUCGCCGgUGCuaC-----------UUGGU---UGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 137802 | 0.66 | 0.974622 |
Target: 5'- gUCGGCGGCCccggcgGCGGcgGGACgGGCgGCc -3' miRNA: 3'- -AGUCGCCGG------UGCUa-CUUGgUUGgUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 152819 | 0.66 | 0.974622 |
Target: 5'- aUCGcGCGG-CAgGccGAGCCGGCCACc -3' miRNA: 3'- -AGU-CGCCgGUgCuaCUUGGUUGGUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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