Results 61 - 80 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10933 | 5' | -54 | NC_002794.1 | + | 70525 | 0.67 | 0.962621 |
Target: 5'- -gAGCGcGCCACGgcGcACCGgcaGCCGCu -3' miRNA: 3'- agUCGC-CGGUGCuaCuUGGU---UGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 133807 | 0.67 | 0.962278 |
Target: 5'- gUCGGUGGCCgacgccgGCGgcGAcGCCGGCgGCGa -3' miRNA: 3'- -AGUCGCCGG-------UGCuaCU-UGGUUGgUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 77213 | 0.67 | 0.95909 |
Target: 5'- cUCGGCGGCCAgcuCGuccGUGGGCgCGAcgcCCGCGg -3' miRNA: 3'- -AGUCGCCGGU---GC---UACUUG-GUU---GGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 70846 | 0.67 | 0.95909 |
Target: 5'- -aAGCGGuCCGCGgcG-GCCGucACCACGg -3' miRNA: 3'- agUCGCC-GGUGCuaCuUGGU--UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 129113 | 0.67 | 0.95909 |
Target: 5'- gCGGCGGCgcgUACGAccgcUGGACCAGCgAgAg -3' miRNA: 3'- aGUCGCCG---GUGCU----ACUUGGUUGgUgU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 160126 | 0.67 | 0.955337 |
Target: 5'- cCGGCGGCCGCGcgucucacUGGcuguCCAACgACGu -3' miRNA: 3'- aGUCGCCGGUGCu-------ACUu---GGUUGgUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 81134 | 0.67 | 0.955337 |
Target: 5'- gCGGCGGCUcCGGguucgucGAGCCGgcGCCGCc -3' miRNA: 3'- aGUCGCCGGuGCUa------CUUGGU--UGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 194602 | 0.67 | 0.955337 |
Target: 5'- cCGGaGGCCAguGUGcGCCAGCCACc -3' miRNA: 3'- aGUCgCCGGUgcUACuUGGUUGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 162917 | 0.67 | 0.958358 |
Target: 5'- cUCGGCGGCCAgggacuugaccuuguCGAcgauccacucgaucuUGAccGCCGACgACAu -3' miRNA: 3'- -AGUCGCCGGU---------------GCU---------------ACU--UGGUUGgUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 177361 | 0.67 | 0.95909 |
Target: 5'- gCAGUagaGGCCGCGA---ACgCGACCGCGa -3' miRNA: 3'- aGUCG---CCGGUGCUacuUG-GUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 146039 | 0.67 | 0.958725 |
Target: 5'- --cGCGGCCACGucUGAuaggcgaggcgccGCCAuuCCGCGu -3' miRNA: 3'- aguCGCCGGUGCu-ACU-------------UGGUu-GGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 162743 | 0.67 | 0.95909 |
Target: 5'- -gAGCGGCCGCGGgcaGAcgauccACCAgguGCUGCGg -3' miRNA: 3'- agUCGCCGGUGCUa--CU------UGGU---UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 39442 | 0.68 | 0.933102 |
Target: 5'- --cGCGGCCACGGccggcgggUGAgagACCggUCGCGc -3' miRNA: 3'- aguCGCCGGUGCU--------ACU---UGGuuGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 123297 | 0.68 | 0.933102 |
Target: 5'- --cGCGGCCGgGAaGAGCCcGCC-CAa -3' miRNA: 3'- aguCGCCGGUgCUaCUUGGuUGGuGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 80270 | 0.68 | 0.933102 |
Target: 5'- gUAGCGGCUGCGGUcGACCcGCuCGCc -3' miRNA: 3'- aGUCGCCGGUGCUAcUUGGuUG-GUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 113314 | 0.68 | 0.933102 |
Target: 5'- gUCAGCGGCCcuccCGccGGcCCAGCCGg- -3' miRNA: 3'- -AGUCGCCGGu---GCuaCUuGGUUGGUgu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 159095 | 0.68 | 0.938021 |
Target: 5'- gCGGaCGGCCACccagcUGuAGCCGGCCGCc -3' miRNA: 3'- aGUC-GCCGGUGcu---AC-UUGGUUGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 82679 | 0.68 | 0.93754 |
Target: 5'- gCGGCGGUCGCGGaGGcgccuccGCCGccGCCACc -3' miRNA: 3'- aGUCGCCGGUGCUaCU-------UGGU--UGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 12896 | 0.68 | 0.933102 |
Target: 5'- aCGGCGGCCGgcuccuCGuucGAGCCGACgGCc -3' miRNA: 3'- aGUCGCCGGU------GCua-CUUGGUUGgUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 177102 | 0.68 | 0.927944 |
Target: 5'- cCGGCGGCaACGAcucuCUAGCCACGa -3' miRNA: 3'- aGUCGCCGgUGCUacuuGGUUGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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