miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 103975 0.79 0.407334
Target:  5'- gCGGCGGCCGCGAcGAGCaguucacGCCGCAg -3'
miRNA:   3'- aGUCGCCGGUGCUaCUUGgu-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 15869 0.78 0.43374
Target:  5'- gCGGUGGCCGCGAcggcgGGcCCGGCCACGa -3'
miRNA:   3'- aGUCGCCGGUGCUa----CUuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 76352 0.78 0.442761
Target:  5'- gUCGuCGGCgGCGcgGAGCCGGCCGCGg -3'
miRNA:   3'- -AGUcGCCGgUGCuaCUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 146984 0.77 0.470439
Target:  5'- gUCGGCGGCCA-GGUGGcagGCCAgcguuGCCGCAg -3'
miRNA:   3'- -AGUCGCCGGUgCUACU---UGGU-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 9516 0.77 0.47986
Target:  5'- aCGGCGGCgGCGAcgUGcccGACCAGCCGCc -3'
miRNA:   3'- aGUCGCCGgUGCU--AC---UUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 153952 0.77 0.47986
Target:  5'- gCAGCGcGCCACGAgccccucgUGGGCCAGCC-CGa -3'
miRNA:   3'- aGUCGC-CGGUGCU--------ACUUGGUUGGuGU- -5'
10933 5' -54 NC_002794.1 + 145427 0.77 0.489372
Target:  5'- gCGGUGGCCACGAucUGGcACCcguGCCGCAg -3'
miRNA:   3'- aGUCGCCGGUGCU--ACU-UGGu--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 119029 0.77 0.518415
Target:  5'- cCAGCGGCCgGCGAUGcgcGCCGGCCuCGu -3'
miRNA:   3'- aGUCGCCGG-UGCUACu--UGGUUGGuGU- -5'
10933 5' -54 NC_002794.1 + 158268 0.76 0.568214
Target:  5'- aUAGCGGUCGCGAUGGA---GCCGCAc -3'
miRNA:   3'- aGUCGCCGGUGCUACUUgguUGGUGU- -5'
10933 5' -54 NC_002794.1 + 10383 0.75 0.59868
Target:  5'- gCGGCGGCCGCGgcGAGggGACCGCc -3'
miRNA:   3'- aGUCGCCGGUGCuaCUUggUUGGUGu -5'
10933 5' -54 NC_002794.1 + 6042 0.75 0.608893
Target:  5'- -gGGCGcGCCACGAUcAACC-GCCACAg -3'
miRNA:   3'- agUCGC-CGGUGCUAcUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 16163 0.75 0.608893
Target:  5'- gCGGCGGCgACGGUGGcgacGCCGGCgGCu -3'
miRNA:   3'- aGUCGCCGgUGCUACU----UGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 187736 0.75 0.619124
Target:  5'- gCGGCGGCCuccuCGGUGA-CCGGCgACGg -3'
miRNA:   3'- aGUCGCCGGu---GCUACUuGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 145221 0.75 0.629366
Target:  5'- cCGGCGGUCGCGaAUGAGCgaaaacauggCGGCCGCGg -3'
miRNA:   3'- aGUCGCCGGUGC-UACUUG----------GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 184210 0.74 0.649846
Target:  5'- -gGGCGGCCgACGAcgcGGcccGCCGGCCACAa -3'
miRNA:   3'- agUCGCCGG-UGCUa--CU---UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 147416 0.74 0.67027
Target:  5'- gCGGCGGCCAUcg-GGACaCAGCCGCc -3'
miRNA:   3'- aGUCGCCGGUGcuaCUUG-GUUGGUGu -5'
10933 5' -54 NC_002794.1 + 163554 0.74 0.67027
Target:  5'- gCGGCGGCCGC-----GCCGGCCGCGg -3'
miRNA:   3'- aGUCGCCGGUGcuacuUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 141375 0.74 0.67027
Target:  5'- -uGGCGGUgGCGGcuuUGAACCAACCgACGu -3'
miRNA:   3'- agUCGCCGgUGCU---ACUUGGUUGG-UGU- -5'
10933 5' -54 NC_002794.1 + 157896 0.74 0.67027
Target:  5'- cUCGGCGGCuCGUGGUacGAGCCGAUCGCGg -3'
miRNA:   3'- -AGUCGCCG-GUGCUA--CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 132404 0.73 0.699646
Target:  5'- gCGGCGGCgACGAUGAcgacgaggcggcgGCCGccgucgacgacGCCGCGg -3'
miRNA:   3'- aGUCGCCGgUGCUACU-------------UGGU-----------UGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.