miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 128122 0.73 0.730512
Target:  5'- gCGGCGGCCACcc-GAGCCcgGAUCACGg -3'
miRNA:   3'- aGUCGCCGGUGcuaCUUGG--UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 68615 0.72 0.750008
Target:  5'- aCGGCcacGGCCACGAcGAcgACCAcgACCGCGa -3'
miRNA:   3'- aGUCG---CCGGUGCUaCU--UGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 18142 0.72 0.750008
Target:  5'- aCGGCGGuCCACGGggcgGAuCCGACCGa- -3'
miRNA:   3'- aGUCGCC-GGUGCUa---CUuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 100762 0.72 0.759605
Target:  5'- -gAGCuGGCCGCGGUGc-CCAACCAa- -3'
miRNA:   3'- agUCG-CCGGUGCUACuuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 164469 0.72 0.769089
Target:  5'- gUCGGCGGCCcCGccGcGCCcGCCGCGc -3'
miRNA:   3'- -AGUCGCCGGuGCuaCuUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 151302 0.72 0.787681
Target:  5'- gCGGCGGCgcccguugacguCACGcgGGACCgAGCCACc -3'
miRNA:   3'- aGUCGCCG------------GUGCuaCUUGG-UUGGUGu -5'
10933 5' -54 NC_002794.1 + 106470 0.72 0.787681
Target:  5'- -gAGCGGUCGCGGUGAgguccguggagcGCCGgcGCCAUc -3'
miRNA:   3'- agUCGCCGGUGCUACU------------UGGU--UGGUGu -5'
10933 5' -54 NC_002794.1 + 176397 0.71 0.805713
Target:  5'- gCGGCGGCgGCGGcgGGACCcGCCGg- -3'
miRNA:   3'- aGUCGCCGgUGCUa-CUUGGuUGGUgu -5'
10933 5' -54 NC_002794.1 + 177157 0.71 0.809246
Target:  5'- aCGGCGGCgGCGGUccggacgucgGAGCCGacgagccgccccaacGCCACGa -3'
miRNA:   3'- aGUCGCCGgUGCUA----------CUUGGU---------------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 68757 0.71 0.814496
Target:  5'- gCGGCGGCuCGcCGAUGAACagcucgAGCCGCu -3'
miRNA:   3'- aGUCGCCG-GU-GCUACUUGg-----UUGGUGu -5'
10933 5' -54 NC_002794.1 + 174877 0.71 0.814496
Target:  5'- gCAGCGGCgGCGGcagcGACCGcggcgGCCACAg -3'
miRNA:   3'- aGUCGCCGgUGCUac--UUGGU-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 15234 0.71 0.820547
Target:  5'- aCGGCGGCCcacccgcgcuccagACGAcGAGCCAG-CGCAg -3'
miRNA:   3'- aGUCGCCGG--------------UGCUaCUUGGUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 183937 0.71 0.823114
Target:  5'- aCGaCGGCCACGGUGAuCgCGAUCGCGg -3'
miRNA:   3'- aGUcGCCGGUGCUACUuG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 156811 0.71 0.831558
Target:  5'- aCGGCGGgcaCCACG-UGAACCAGucgucCCGCGa -3'
miRNA:   3'- aGUCGCC---GGUGCuACUUGGUU-----GGUGU- -5'
10933 5' -54 NC_002794.1 + 170331 0.71 0.831558
Target:  5'- aCGGa-GCCuCGAUGAGCCGGCCAg- -3'
miRNA:   3'- aGUCgcCGGuGCUACUUGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 11262 0.71 0.831558
Target:  5'- --cGCGGCCGCGG-GAucggcaacgGCCAGCgGCAg -3'
miRNA:   3'- aguCGCCGGUGCUaCU---------UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 147229 0.7 0.83982
Target:  5'- -gAGCGGCCGuCGGggcccgcGAGCC-GCCGCAg -3'
miRNA:   3'- agUCGCCGGU-GCUa------CUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 141938 0.7 0.847893
Target:  5'- gUCGGCGGCgC-CGccGAACCGagcucgcagccGCCACAg -3'
miRNA:   3'- -AGUCGCCG-GuGCuaCUUGGU-----------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 85584 0.7 0.847893
Target:  5'- aCGGCGGCCGCcGUccucGGGCCcgagAGCCGCGg -3'
miRNA:   3'- aGUCGCCGGUGcUA----CUUGG----UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 138241 0.7 0.847893
Target:  5'- -aGGCGGCCgACGAccuGGCCGACcCGCAg -3'
miRNA:   3'- agUCGCCGG-UGCUac-UUGGUUG-GUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.