miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 175693 0.7 0.862686
Target:  5'- -uGGCGGCCccauaccGCGA-GAGCCcGCCGCc -3'
miRNA:   3'- agUCGCCGG-------UGCUaCUUGGuUGGUGu -5'
10933 5' -54 NC_002794.1 + 58387 0.7 0.863445
Target:  5'- gUCGGCGGCCuCGuaGAGCagcGCCACGg -3'
miRNA:   3'- -AGUCGCCGGuGCuaCUUGgu-UGGUGU- -5'
10933 5' -54 NC_002794.1 + 74737 0.7 0.863445
Target:  5'- aUCGGCGGCCAgG--GAACCuggGugCACAu -3'
miRNA:   3'- -AGUCGCCGGUgCuaCUUGG---UugGUGU- -5'
10933 5' -54 NC_002794.1 + 104123 0.7 0.863445
Target:  5'- cUCGGCGGCCAacaaGGUGccGGCgGGCgGCAc -3'
miRNA:   3'- -AGUCGCCGGUg---CUAC--UUGgUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 163963 0.7 0.868693
Target:  5'- cCAGCGGCgcguCGCuGAUGAGcgccgacaggacguCCAGCCGCGc -3'
miRNA:   3'- aGUCGCCG----GUG-CUACUU--------------GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 180590 0.7 0.87091
Target:  5'- gUCGGCGaGCCGCGcgGcuCCcuCCGCGc -3'
miRNA:   3'- -AGUCGC-CGGUGCuaCuuGGuuGGUGU- -5'
10933 5' -54 NC_002794.1 + 140648 0.7 0.878161
Target:  5'- gCGGCggaGGCCgGCGGUcGAGCCGACgACGa -3'
miRNA:   3'- aGUCG---CCGG-UGCUA-CUUGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 139693 0.7 0.878161
Target:  5'- gCAGCGGCCcCGGUGcacguagagcACCgGGCCGCGg -3'
miRNA:   3'- aGUCGCCGGuGCUACu---------UGG-UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 109135 0.7 0.878161
Target:  5'- ---cCGGCCACcuaGAgccGAGCCGACCGCGa -3'
miRNA:   3'- agucGCCGGUG---CUa--CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 177332 0.7 0.878161
Target:  5'- --cGCGGCCGCGAacgcGAGCaCGAgCACGg -3'
miRNA:   3'- aguCGCCGGUGCUa---CUUG-GUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 134328 0.7 0.878161
Target:  5'- cCGGCGGCCgccGCGAaGAcgacGCC-GCCGCGg -3'
miRNA:   3'- aGUCGCCGG---UGCUaCU----UGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 109014 0.7 0.878161
Target:  5'- gUCGGCGGCCccgcCGGgauUGggUCuGCCGCGg -3'
miRNA:   3'- -AGUCGCCGGu---GCU---ACuuGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 65517 0.7 0.878161
Target:  5'- -aGGCGGCgACGAcGAcGCCGACgACGa -3'
miRNA:   3'- agUCGCCGgUGCUaCU-UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 125191 0.69 0.885192
Target:  5'- gCGGCGGCCgccgcgGCGGUGAcguCCugucGCCGCu -3'
miRNA:   3'- aGUCGCCGG------UGCUACUu--GGu---UGGUGu -5'
10933 5' -54 NC_002794.1 + 67593 0.69 0.891999
Target:  5'- gUCGG-GGCCgaGCGcgGAGCCGACgGCc -3'
miRNA:   3'- -AGUCgCCGG--UGCuaCUUGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 1023 0.69 0.891999
Target:  5'- --cGCGGCC-CGgcGucuCCAGCCGCAc -3'
miRNA:   3'- aguCGCCGGuGCuaCuu-GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 146450 0.69 0.891999
Target:  5'- aCGGCGGCCGCGgcGGcGgCGGCCGuCAc -3'
miRNA:   3'- aGUCGCCGGUGCuaCU-UgGUUGGU-GU- -5'
10933 5' -54 NC_002794.1 + 77169 0.69 0.896628
Target:  5'- cCGGCGGCagcgcccaggagcgCAUGAUG-GCCAGCUGCGc -3'
miRNA:   3'- aGUCGCCG--------------GUGCUACuUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 3225 0.69 0.898577
Target:  5'- -gGGCGGCCGCu-----CCAGCCGCGc -3'
miRNA:   3'- agUCGCCGGUGcuacuuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 48713 0.69 0.898577
Target:  5'- aCGGCcccggGGCCGCGA-GGGCCAGCUg-- -3'
miRNA:   3'- aGUCG-----CCGGUGCUaCUUGGUUGGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.