miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 48713 0.69 0.898577
Target:  5'- aCGGCcccggGGCCGCGA-GGGCCAGCUg-- -3'
miRNA:   3'- aGUCG-----CCGGUGCUaCUUGGUUGGugu -5'
10933 5' -54 NC_002794.1 + 79721 0.69 0.904924
Target:  5'- gCGGCGGCgGCGGccaGGGCCugcACCGCc -3'
miRNA:   3'- aGUCGCCGgUGCUa--CUUGGu--UGGUGu -5'
10933 5' -54 NC_002794.1 + 61179 0.69 0.904924
Target:  5'- --cGCGGCCGCGcuUGGcUCGACCGCc -3'
miRNA:   3'- aguCGCCGGUGCu-ACUuGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 101383 0.69 0.911035
Target:  5'- aCGGCGGCgGCGG---ACgCGGCCGCGg -3'
miRNA:   3'- aGUCGCCGgUGCUacuUG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 100093 0.69 0.911035
Target:  5'- gCGGCGGCCGCGAcGGcgGCCGgggcgagaggcGCgGCGg -3'
miRNA:   3'- aGUCGCCGGUGCUaCU--UGGU-----------UGgUGU- -5'
10933 5' -54 NC_002794.1 + 61935 0.68 0.91691
Target:  5'- aCGGCGGCCGCGcccguCCAGuuGCGg -3'
miRNA:   3'- aGUCGCCGGUGCuacuuGGUUggUGU- -5'
10933 5' -54 NC_002794.1 + 112897 0.68 0.919194
Target:  5'- aCGGCGcGCaCGCGAcgcaggucgcgacgcUGAACCuggcGCCGCAc -3'
miRNA:   3'- aGUCGC-CG-GUGCU---------------ACUUGGu---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 1065 0.68 0.922547
Target:  5'- gCAGCGGCUcccaGUGccccACCAGCCGCAg -3'
miRNA:   3'- aGUCGCCGGugc-UACu---UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 169551 0.68 0.922547
Target:  5'- gUCA-CGGCCggACGAUGAcGCgGACCGCc -3'
miRNA:   3'- -AGUcGCCGG--UGCUACU-UGgUUGGUGu -5'
10933 5' -54 NC_002794.1 + 104266 0.68 0.922547
Target:  5'- -gAGUGGCCGCuGGUGcgcgcGGCCGaggGCCACGc -3'
miRNA:   3'- agUCGCCGGUG-CUAC-----UUGGU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 75333 0.68 0.927944
Target:  5'- gCGGUGGCCccCGGgcuGACCAGCCugGu -3'
miRNA:   3'- aGUCGCCGGu-GCUac-UUGGUUGGugU- -5'
10933 5' -54 NC_002794.1 + 88881 0.68 0.927944
Target:  5'- gCGGCGGCCggcacgGCGGUGGcggcGCUGGCCGa- -3'
miRNA:   3'- aGUCGCCGG------UGCUACU----UGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 124622 0.68 0.927944
Target:  5'- -uGGCGGCCgGCG-UGGACCGG-CACGu -3'
miRNA:   3'- agUCGCCGG-UGCuACUUGGUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 52384 0.68 0.927944
Target:  5'- aCGGCuGGCagACGAUGucGCUGGCCGCGg -3'
miRNA:   3'- aGUCG-CCGg-UGCUACu-UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 149543 0.68 0.927944
Target:  5'- gCGGCGGCgACGGc--GCCGucGCCGCGg -3'
miRNA:   3'- aGUCGCCGgUGCUacuUGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 177102 0.68 0.927944
Target:  5'- cCGGCGGCaACGAcucuCUAGCCACGa -3'
miRNA:   3'- aGUCGCCGgUGCUacuuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 12896 0.68 0.933102
Target:  5'- aCGGCGGCCGgcuccuCGuucGAGCCGACgGCc -3'
miRNA:   3'- aGUCGCCGGU------GCua-CUUGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 113314 0.68 0.933102
Target:  5'- gUCAGCGGCCcuccCGccGGcCCAGCCGg- -3'
miRNA:   3'- -AGUCGCCGGu---GCuaCUuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 80270 0.68 0.933102
Target:  5'- gUAGCGGCUGCGGUcGACCcGCuCGCc -3'
miRNA:   3'- aGUCGCCGGUGCUAcUUGGuUG-GUGu -5'
10933 5' -54 NC_002794.1 + 123297 0.68 0.933102
Target:  5'- --cGCGGCCGgGAaGAGCCcGCC-CAa -3'
miRNA:   3'- aguCGCCGGUgCUaCUUGGuUGGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.