miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 159446 0.66 0.971928
Target:  5'- gUAGCGGCgGCuGAUGAagcggaagACCAGgCGCc -3'
miRNA:   3'- aGUCGCCGgUG-CUACU--------UGGUUgGUGu -5'
10933 5' -54 NC_002794.1 + 155747 0.66 0.969034
Target:  5'- aCGGgGGCgCGCGA-GAGCgGagaGCCACGg -3'
miRNA:   3'- aGUCgCCG-GUGCUaCUUGgU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 10649 0.66 0.969034
Target:  5'- gCGGCucgcGCCGCGGaGAgucgcGCCGACCGCc -3'
miRNA:   3'- aGUCGc---CGGUGCUaCU-----UGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 162025 0.66 0.969034
Target:  5'- cCGGUgaaGGCCGUGGUGA-CCAGCCgGCAc -3'
miRNA:   3'- aGUCG---CCGGUGCUACUuGGUUGG-UGU- -5'
10933 5' -54 NC_002794.1 + 134039 0.66 0.969034
Target:  5'- cCGGCGGCCGCcggcGGCCGGCguCAc -3'
miRNA:   3'- aGUCGCCGGUGcuacUUGGUUGguGU- -5'
10933 5' -54 NC_002794.1 + 48156 0.66 0.969034
Target:  5'- --uGCGGCgCACG-UGcGCCAguACCGCGg -3'
miRNA:   3'- aguCGCCG-GUGCuACuUGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 13065 0.66 0.969034
Target:  5'- cCAGCgcacGGUCGCGGUcGAcagcucguCCAGCCGCGg -3'
miRNA:   3'- aGUCG----CCGGUGCUA-CUu-------GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 45875 0.66 0.969034
Target:  5'- cCGGCGGCCGCuAUcuGCCGcgcuGCUACGa -3'
miRNA:   3'- aGUCGCCGGUGcUAcuUGGU----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 94366 0.66 0.969034
Target:  5'- cCGGCGGCCGgucCGAgcGGugCGGCaCACGc -3'
miRNA:   3'- aGUCGCCGGU---GCUa-CUugGUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 80925 0.66 0.965934
Target:  5'- gCAGCgucccGGUCACGAUcugguugugGGACC-GCCGCAg -3'
miRNA:   3'- aGUCG-----CCGGUGCUA---------CUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 147629 0.66 0.965934
Target:  5'- -aGGCGGCCGCcaucguUCGGCCGCAg -3'
miRNA:   3'- agUCGCCGGUGcuacuuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 126456 0.66 0.965934
Target:  5'- -gAGCGGCCagGCGccGAGCC-GCgACAg -3'
miRNA:   3'- agUCGCCGG--UGCuaCUUGGuUGgUGU- -5'
10933 5' -54 NC_002794.1 + 72628 0.66 0.965934
Target:  5'- -gAGCGGCCugGccAUcAGCCuguGCCACu -3'
miRNA:   3'- agUCGCCGGugC--UAcUUGGu--UGGUGu -5'
10933 5' -54 NC_002794.1 + 10511 0.66 0.965934
Target:  5'- cUCGcGCGccGCCGCGAgcGGGCCGaacGCCGCGa -3'
miRNA:   3'- -AGU-CGC--CGGUGCUa-CUUGGU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 52313 0.66 0.965934
Target:  5'- --cGCGGCacgagCACGGUGGcCCAGCCGu- -3'
miRNA:   3'- aguCGCCG-----GUGCUACUuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 57674 0.66 0.965934
Target:  5'- cUCGGCGGCCAgcCGGU---CCAcguCCACGg -3'
miRNA:   3'- -AGUCGCCGGU--GCUAcuuGGUu--GGUGU- -5'
10933 5' -54 NC_002794.1 + 106150 0.67 0.962621
Target:  5'- aCGGC-GCCGCGGU--GCCGAuCCGCGc -3'
miRNA:   3'- aGUCGcCGGUGCUAcuUGGUU-GGUGU- -5'
10933 5' -54 NC_002794.1 + 104167 0.67 0.962621
Target:  5'- uUCAGCGGCaacuCGGUGcucuACCAgACgCGCAu -3'
miRNA:   3'- -AGUCGCCGgu--GCUACu---UGGU-UG-GUGU- -5'
10933 5' -54 NC_002794.1 + 71827 0.67 0.962621
Target:  5'- aCGGUGGCCGucugucugaagaUGgcGAACC-GCCACGg -3'
miRNA:   3'- aGUCGCCGGU------------GCuaCUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 108479 0.67 0.962621
Target:  5'- -gGGCGG-CGCGGccaGAGCgAGCCGCAu -3'
miRNA:   3'- agUCGCCgGUGCUa--CUUGgUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.