miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 104167 0.67 0.962621
Target:  5'- uUCAGCGGCaacuCGGUGcucuACCAgACgCGCAu -3'
miRNA:   3'- -AGUCGCCGgu--GCUACu---UGGU-UG-GUGU- -5'
10933 5' -54 NC_002794.1 + 160415 0.67 0.962621
Target:  5'- cUCAGCuGCCuGCGGcUGAucGCCAGCUGCc -3'
miRNA:   3'- -AGUCGcCGG-UGCU-ACU--UGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 133807 0.67 0.962278
Target:  5'- gUCGGUGGCCgacgccgGCGgcGAcGCCGGCgGCGa -3'
miRNA:   3'- -AGUCGCCGG-------UGCuaCU-UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 177361 0.67 0.95909
Target:  5'- gCAGUagaGGCCGCGA---ACgCGACCGCGa -3'
miRNA:   3'- aGUCG---CCGGUGCUacuUG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 162743 0.67 0.95909
Target:  5'- -gAGCGGCCGCGGgcaGAcgauccACCAgguGCUGCGg -3'
miRNA:   3'- agUCGCCGGUGCUa--CU------UGGU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 129113 0.67 0.95909
Target:  5'- gCGGCGGCgcgUACGAccgcUGGACCAGCgAgAg -3'
miRNA:   3'- aGUCGCCG---GUGCU----ACUUGGUUGgUgU- -5'
10933 5' -54 NC_002794.1 + 70846 0.67 0.95909
Target:  5'- -aAGCGGuCCGCGgcG-GCCGucACCACGg -3'
miRNA:   3'- agUCGCC-GGUGCuaCuUGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 77213 0.67 0.95909
Target:  5'- cUCGGCGGCCAgcuCGuccGUGGGCgCGAcgcCCGCGg -3'
miRNA:   3'- -AGUCGCCGGU---GC---UACUUG-GUU---GGUGU- -5'
10933 5' -54 NC_002794.1 + 146039 0.67 0.958725
Target:  5'- --cGCGGCCACGucUGAuaggcgaggcgccGCCAuuCCGCGu -3'
miRNA:   3'- aguCGCCGGUGCu-ACU-------------UGGUu-GGUGU- -5'
10933 5' -54 NC_002794.1 + 162917 0.67 0.958358
Target:  5'- cUCGGCGGCCAgggacuugaccuuguCGAcgauccacucgaucuUGAccGCCGACgACAu -3'
miRNA:   3'- -AGUCGCCGGU---------------GCU---------------ACU--UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 194602 0.67 0.955337
Target:  5'- cCGGaGGCCAguGUGcGCCAGCCACc -3'
miRNA:   3'- aGUCgCCGGUgcUACuUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 81134 0.67 0.955337
Target:  5'- gCGGCGGCUcCGGguucgucGAGCCGgcGCCGCc -3'
miRNA:   3'- aGUCGCCGGuGCUa------CUUGGU--UGGUGu -5'
10933 5' -54 NC_002794.1 + 160126 0.67 0.955337
Target:  5'- cCGGCGGCCGCGcgucucacUGGcuguCCAACgACGu -3'
miRNA:   3'- aGUCGCCGGUGCu-------ACUu---GGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 103354 0.67 0.95495
Target:  5'- -aGGCGGCCAuggcccuggugucCGAggugcgcaUGAAguCCAACCGCGa -3'
miRNA:   3'- agUCGCCGGU-------------GCU--------ACUU--GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 192501 0.67 0.954167
Target:  5'- -gGGUGGCCgauucugggaaaaaGCGGaacGAGCCGGCCGCc -3'
miRNA:   3'- agUCGCCGG--------------UGCUa--CUUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 90987 0.67 0.951357
Target:  5'- aCAGCaGGCgCGUGAagcGGGCCGGCCGCGa -3'
miRNA:   3'- aGUCG-CCG-GUGCUa--CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 80774 0.67 0.951357
Target:  5'- cUCGGCGGCCGCccgcAGCCGcgcguCCGCGu -3'
miRNA:   3'- -AGUCGCCGGUGcuacUUGGUu----GGUGU- -5'
10933 5' -54 NC_002794.1 + 133157 0.67 0.951357
Target:  5'- gUCGGCGGCCGcCGAcgcGAcCCAGCgagaCGCAc -3'
miRNA:   3'- -AGUCGCCGGU-GCUa--CUuGGUUG----GUGU- -5'
10933 5' -54 NC_002794.1 + 4182 0.67 0.951357
Target:  5'- gCAGCGGCgGCGgcGuGCCcucgucgcgGACCACc -3'
miRNA:   3'- aGUCGCCGgUGCuaCuUGG---------UUGGUGu -5'
10933 5' -54 NC_002794.1 + 146840 0.67 0.951357
Target:  5'- gCGGCGGCCGCGgcGucguCCGG-CGCGg -3'
miRNA:   3'- aGUCGCCGGUGCuaCuu--GGUUgGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.