miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 128842 0.67 0.951357
Target:  5'- cCGGCGGCgGCGGccgGcuCCcGCCGCGu -3'
miRNA:   3'- aGUCGCCGgUGCUa--CuuGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 153618 0.67 0.947146
Target:  5'- aCGGCGGCgACGAacuccGAGCCcgcuCCGCc -3'
miRNA:   3'- aGUCGCCGgUGCUa----CUUGGuu--GGUGu -5'
10933 5' -54 NC_002794.1 + 5097 0.67 0.947146
Target:  5'- gCGGCGGCCGCgcgucccgguaGAUGAACuCGGuCCGgGa -3'
miRNA:   3'- aGUCGCCGGUG-----------CUACUUG-GUU-GGUgU- -5'
10933 5' -54 NC_002794.1 + 149078 0.67 0.947146
Target:  5'- cCAGCGGCgGCGgcGAcaaaaGCaCGACaCACAu -3'
miRNA:   3'- aGUCGCCGgUGCuaCU-----UG-GUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 72535 0.67 0.946712
Target:  5'- gCAGgGGCCGCagcugggGGUGGcguuccaacgguACCGGCCGCu -3'
miRNA:   3'- aGUCgCCGGUG-------CUACU------------UGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 129000 0.67 0.942702
Target:  5'- gCGGCgaGGCCGCGGcgugcggcUGAGCCA-UCGCGg -3'
miRNA:   3'- aGUCG--CCGGUGCU--------ACUUGGUuGGUGU- -5'
10933 5' -54 NC_002794.1 + 92405 0.67 0.942702
Target:  5'- gCuGCGGCUgguUGAUGGA-CAGCCGCAg -3'
miRNA:   3'- aGuCGCCGGu--GCUACUUgGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 37709 0.67 0.942702
Target:  5'- gCGGCgacgaggggaaGGuCCACGGUGAGCgGaACCGCGa -3'
miRNA:   3'- aGUCG-----------CC-GGUGCUACUUGgU-UGGUGU- -5'
10933 5' -54 NC_002794.1 + 75777 0.67 0.942702
Target:  5'- gCGGUGGCgGCGAcGAccguGCCGAgCGCGc -3'
miRNA:   3'- aGUCGCCGgUGCUaCU----UGGUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 145507 0.67 0.942702
Target:  5'- cCGGCuccGCCAUGAccgcgGAGCCGGCCgGCAg -3'
miRNA:   3'- aGUCGc--CGGUGCUa----CUUGGUUGG-UGU- -5'
10933 5' -54 NC_002794.1 + 81028 0.67 0.942702
Target:  5'- cCGGCGGCCGagucggcuCGGaGGACCucccGCCGCu -3'
miRNA:   3'- aGUCGCCGGU--------GCUaCUUGGu---UGGUGu -5'
10933 5' -54 NC_002794.1 + 936 0.67 0.941784
Target:  5'- gCAGCGGCCGCaccagcuCCGACgGCGa -3'
miRNA:   3'- aGUCGCCGGUGcuacuu-GGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 49503 0.68 0.938021
Target:  5'- gCGGCGGCCGCccgGGuaGCCGuCCGCu -3'
miRNA:   3'- aGUCGCCGGUGcuaCU--UGGUuGGUGu -5'
10933 5' -54 NC_002794.1 + 159095 0.68 0.938021
Target:  5'- gCGGaCGGCCACccagcUGuAGCCGGCCGCc -3'
miRNA:   3'- aGUC-GCCGGUGcu---AC-UUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 82679 0.68 0.93754
Target:  5'- gCGGCGGUCGCGGaGGcgccuccGCCGccGCCACc -3'
miRNA:   3'- aGUCGCCGGUGCUaCU-------UGGU--UGGUGu -5'
10933 5' -54 NC_002794.1 + 12896 0.68 0.933102
Target:  5'- aCGGCGGCCGgcuccuCGuucGAGCCGACgGCc -3'
miRNA:   3'- aGUCGCCGGU------GCua-CUUGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 113314 0.68 0.933102
Target:  5'- gUCAGCGGCCcuccCGccGGcCCAGCCGg- -3'
miRNA:   3'- -AGUCGCCGGu---GCuaCUuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 80270 0.68 0.933102
Target:  5'- gUAGCGGCUGCGGUcGACCcGCuCGCc -3'
miRNA:   3'- aGUCGCCGGUGCUAcUUGGuUG-GUGu -5'
10933 5' -54 NC_002794.1 + 123297 0.68 0.933102
Target:  5'- --cGCGGCCGgGAaGAGCCcGCC-CAa -3'
miRNA:   3'- aguCGCCGGUgCUaCUUGGuUGGuGU- -5'
10933 5' -54 NC_002794.1 + 39442 0.68 0.933102
Target:  5'- --cGCGGCCACGGccggcgggUGAgagACCggUCGCGc -3'
miRNA:   3'- aguCGCCGGUGCU--------ACU---UGGuuGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.