Results 81 - 100 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10933 | 5' | -54 | NC_002794.1 | + | 75333 | 0.68 | 0.927944 |
Target: 5'- gCGGUGGCCccCGGgcuGACCAGCCugGu -3' miRNA: 3'- aGUCGCCGGu-GCUac-UUGGUUGGugU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 124622 | 0.68 | 0.927944 |
Target: 5'- -uGGCGGCCgGCG-UGGACCGG-CACGu -3' miRNA: 3'- agUCGCCGG-UGCuACUUGGUUgGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 149543 | 0.68 | 0.927944 |
Target: 5'- gCGGCGGCgACGGc--GCCGucGCCGCGg -3' miRNA: 3'- aGUCGCCGgUGCUacuUGGU--UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 88881 | 0.68 | 0.927944 |
Target: 5'- gCGGCGGCCggcacgGCGGUGGcggcGCUGGCCGa- -3' miRNA: 3'- aGUCGCCGG------UGCUACU----UGGUUGGUgu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 52384 | 0.68 | 0.927944 |
Target: 5'- aCGGCuGGCagACGAUGucGCUGGCCGCGg -3' miRNA: 3'- aGUCG-CCGg-UGCUACu-UGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 177102 | 0.68 | 0.927944 |
Target: 5'- cCGGCGGCaACGAcucuCUAGCCACGa -3' miRNA: 3'- aGUCGCCGgUGCUacuuGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 1065 | 0.68 | 0.922547 |
Target: 5'- gCAGCGGCUcccaGUGccccACCAGCCGCAg -3' miRNA: 3'- aGUCGCCGGugc-UACu---UGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 104266 | 0.68 | 0.922547 |
Target: 5'- -gAGUGGCCGCuGGUGcgcgcGGCCGaggGCCACGc -3' miRNA: 3'- agUCGCCGGUG-CUAC-----UUGGU---UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 169551 | 0.68 | 0.922547 |
Target: 5'- gUCA-CGGCCggACGAUGAcGCgGACCGCc -3' miRNA: 3'- -AGUcGCCGG--UGCUACU-UGgUUGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 112897 | 0.68 | 0.919194 |
Target: 5'- aCGGCGcGCaCGCGAcgcaggucgcgacgcUGAACCuggcGCCGCAc -3' miRNA: 3'- aGUCGC-CG-GUGCU---------------ACUUGGu---UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 61935 | 0.68 | 0.91691 |
Target: 5'- aCGGCGGCCGCGcccguCCAGuuGCGg -3' miRNA: 3'- aGUCGCCGGUGCuacuuGGUUggUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 101383 | 0.69 | 0.911035 |
Target: 5'- aCGGCGGCgGCGG---ACgCGGCCGCGg -3' miRNA: 3'- aGUCGCCGgUGCUacuUG-GUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 100093 | 0.69 | 0.911035 |
Target: 5'- gCGGCGGCCGCGAcGGcgGCCGgggcgagaggcGCgGCGg -3' miRNA: 3'- aGUCGCCGGUGCUaCU--UGGU-----------UGgUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 61179 | 0.69 | 0.904924 |
Target: 5'- --cGCGGCCGCGcuUGGcUCGACCGCc -3' miRNA: 3'- aguCGCCGGUGCu-ACUuGGUUGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 79721 | 0.69 | 0.904924 |
Target: 5'- gCGGCGGCgGCGGccaGGGCCugcACCGCc -3' miRNA: 3'- aGUCGCCGgUGCUa--CUUGGu--UGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 48713 | 0.69 | 0.898577 |
Target: 5'- aCGGCcccggGGCCGCGA-GGGCCAGCUg-- -3' miRNA: 3'- aGUCG-----CCGGUGCUaCUUGGUUGGugu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 153259 | 0.69 | 0.898577 |
Target: 5'- gCGGCGGCCGgGAgcGGGCUcucucgacGACCGCGc -3' miRNA: 3'- aGUCGCCGGUgCUa-CUUGG--------UUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 3225 | 0.69 | 0.898577 |
Target: 5'- -gGGCGGCCGCu-----CCAGCCGCGc -3' miRNA: 3'- agUCGCCGGUGcuacuuGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 77169 | 0.69 | 0.896628 |
Target: 5'- cCGGCGGCagcgcccaggagcgCAUGAUG-GCCAGCUGCGc -3' miRNA: 3'- aGUCGCCG--------------GUGCUACuUGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 146450 | 0.69 | 0.891999 |
Target: 5'- aCGGCGGCCGCGgcGGcGgCGGCCGuCAc -3' miRNA: 3'- aGUCGCCGGUGCuaCU-UgGUUGGU-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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