miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 936 0.67 0.941784
Target:  5'- gCAGCGGCCGCaccagcuCCGACgGCGa -3'
miRNA:   3'- aGUCGCCGGUGcuacuu-GGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 1023 0.69 0.891999
Target:  5'- --cGCGGCC-CGgcGucuCCAGCCGCAc -3'
miRNA:   3'- aguCGCCGGuGCuaCuu-GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 1065 0.68 0.922547
Target:  5'- gCAGCGGCUcccaGUGccccACCAGCCGCAg -3'
miRNA:   3'- aGUCGCCGGugc-UACu---UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 3225 0.69 0.898577
Target:  5'- -gGGCGGCCGCu-----CCAGCCGCGc -3'
miRNA:   3'- agUCGCCGGUGcuacuuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 4182 0.67 0.951357
Target:  5'- gCAGCGGCgGCGgcGuGCCcucgucgcgGACCACc -3'
miRNA:   3'- aGUCGCCGgUGCuaCuUGG---------UUGGUGu -5'
10933 5' -54 NC_002794.1 + 5097 0.67 0.947146
Target:  5'- gCGGCGGCCGCgcgucccgguaGAUGAACuCGGuCCGgGa -3'
miRNA:   3'- aGUCGCCGGUG-----------CUACUUG-GUU-GGUgU- -5'
10933 5' -54 NC_002794.1 + 6042 0.75 0.608893
Target:  5'- -gGGCGcGCCACGAUcAACC-GCCACAg -3'
miRNA:   3'- agUCGC-CGGUGCUAcUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 9516 0.77 0.47986
Target:  5'- aCGGCGGCgGCGAcgUGcccGACCAGCCGCc -3'
miRNA:   3'- aGUCGCCGgUGCU--AC---UUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 10383 0.75 0.59868
Target:  5'- gCGGCGGCCGCGgcGAGggGACCGCc -3'
miRNA:   3'- aGUCGCCGGUGCuaCUUggUUGGUGu -5'
10933 5' -54 NC_002794.1 + 10511 0.66 0.965934
Target:  5'- cUCGcGCGccGCCGCGAgcGGGCCGaacGCCGCGa -3'
miRNA:   3'- -AGU-CGC--CGGUGCUa-CUUGGU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 10649 0.66 0.969034
Target:  5'- gCGGCucgcGCCGCGGaGAgucgcGCCGACCGCc -3'
miRNA:   3'- aGUCGc---CGGUGCUaCU-----UGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 11262 0.71 0.831558
Target:  5'- --cGCGGCCGCGG-GAucggcaacgGCCAGCgGCAg -3'
miRNA:   3'- aguCGCCGGUGCUaCU---------UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 12896 0.68 0.933102
Target:  5'- aCGGCGGCCGgcuccuCGuucGAGCCGACgGCc -3'
miRNA:   3'- aGUCGCCGGU------GCua-CUUGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 13065 0.66 0.969034
Target:  5'- cCAGCgcacGGUCGCGGUcGAcagcucguCCAGCCGCGg -3'
miRNA:   3'- aGUCG----CCGGUGCUA-CUu-------GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 15234 0.71 0.820547
Target:  5'- aCGGCGGCCcacccgcgcuccagACGAcGAGCCAG-CGCAg -3'
miRNA:   3'- aGUCGCCGG--------------UGCUaCUUGGUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 15869 0.78 0.43374
Target:  5'- gCGGUGGCCGCGAcggcgGGcCCGGCCACGa -3'
miRNA:   3'- aGUCGCCGGUGCUa----CUuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 16163 0.75 0.608893
Target:  5'- gCGGCGGCgACGGUGGcgacGCCGGCgGCu -3'
miRNA:   3'- aGUCGCCGgUGCUACU----UGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 18142 0.72 0.750008
Target:  5'- aCGGCGGuCCACGGggcgGAuCCGACCGa- -3'
miRNA:   3'- aGUCGCC-GGUGCUa---CUuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 37709 0.67 0.942702
Target:  5'- gCGGCgacgaggggaaGGuCCACGGUGAGCgGaACCGCGa -3'
miRNA:   3'- aGUCG-----------CC-GGUGCUACUUGgU-UGGUGU- -5'
10933 5' -54 NC_002794.1 + 39442 0.68 0.933102
Target:  5'- --cGCGGCCACGGccggcgggUGAgagACCggUCGCGc -3'
miRNA:   3'- aguCGCCGGUGCU--------ACU---UGGuuGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.