miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 45875 0.66 0.969034
Target:  5'- cCGGCGGCCGCuAUcuGCCGcgcuGCUACGa -3'
miRNA:   3'- aGUCGCCGGUGcUAcuUGGU----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 46161 0.66 0.971928
Target:  5'- gCGGgGGCCGCcuggcgGGUGGGCCGccugccucGCUACGg -3'
miRNA:   3'- aGUCgCCGGUG------CUACUUGGU--------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 48156 0.66 0.969034
Target:  5'- --uGCGGCgCACG-UGcGCCAguACCGCGg -3'
miRNA:   3'- aguCGCCG-GUGCuACuUGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 48713 0.69 0.898577
Target:  5'- aCGGCcccggGGCCGCGA-GGGCCAGCUg-- -3'
miRNA:   3'- aGUCG-----CCGGUGCUaCUUGGUUGGugu -5'
10933 5' -54 NC_002794.1 + 49503 0.68 0.938021
Target:  5'- gCGGCGGCCGCccgGGuaGCCGuCCGCu -3'
miRNA:   3'- aGUCGCCGGUGcuaCU--UGGUuGGUGu -5'
10933 5' -54 NC_002794.1 + 52313 0.66 0.965934
Target:  5'- --cGCGGCacgagCACGGUGGcCCAGCCGu- -3'
miRNA:   3'- aguCGCCG-----GUGCUACUuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 52384 0.68 0.927944
Target:  5'- aCGGCuGGCagACGAUGucGCUGGCCGCGg -3'
miRNA:   3'- aGUCG-CCGg-UGCUACu-UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 57674 0.66 0.965934
Target:  5'- cUCGGCGGCCAgcCGGU---CCAcguCCACGg -3'
miRNA:   3'- -AGUCGCCGGU--GCUAcuuGGUu--GGUGU- -5'
10933 5' -54 NC_002794.1 + 58387 0.7 0.863445
Target:  5'- gUCGGCGGCCuCGuaGAGCagcGCCACGg -3'
miRNA:   3'- -AGUCGCCGGuGCuaCUUGgu-UGGUGU- -5'
10933 5' -54 NC_002794.1 + 59421 0.66 0.973835
Target:  5'- gCGGCGGCUGCGuccgcuguUGggUCAggucggcgagguucGCCGCGu -3'
miRNA:   3'- aGUCGCCGGUGCu-------ACuuGGU--------------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 61179 0.69 0.904924
Target:  5'- --cGCGGCCGCGcuUGGcUCGACCGCc -3'
miRNA:   3'- aguCGCCGGUGCu-ACUuGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 61935 0.68 0.91691
Target:  5'- aCGGCGGCCGCGcccguCCAGuuGCGg -3'
miRNA:   3'- aGUCGCCGGUGCuacuuGGUUggUGU- -5'
10933 5' -54 NC_002794.1 + 65517 0.7 0.878161
Target:  5'- -aGGCGGCgACGAcGAcGCCGACgACGa -3'
miRNA:   3'- agUCGCCGgUGCUaCU-UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 67593 0.69 0.891999
Target:  5'- gUCGG-GGCCgaGCGcgGAGCCGACgGCc -3'
miRNA:   3'- -AGUCgCCGG--UGCuaCUUGGUUGgUGu -5'
10933 5' -54 NC_002794.1 + 68615 0.72 0.750008
Target:  5'- aCGGCcacGGCCACGAcGAcgACCAcgACCGCGa -3'
miRNA:   3'- aGUCG---CCGGUGCUaCU--UGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 68757 0.71 0.814496
Target:  5'- gCGGCGGCuCGcCGAUGAACagcucgAGCCGCu -3'
miRNA:   3'- aGUCGCCG-GU-GCUACUUGg-----UUGGUGu -5'
10933 5' -54 NC_002794.1 + 70525 0.67 0.962621
Target:  5'- -gAGCGcGCCACGgcGcACCGgcaGCCGCu -3'
miRNA:   3'- agUCGC-CGGUGCuaCuUGGU---UGGUGu -5'
10933 5' -54 NC_002794.1 + 70846 0.67 0.95909
Target:  5'- -aAGCGGuCCGCGgcG-GCCGucACCACGg -3'
miRNA:   3'- agUCGCC-GGUGCuaCuUGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 71827 0.67 0.962621
Target:  5'- aCGGUGGCCGucugucugaagaUGgcGAACC-GCCACGg -3'
miRNA:   3'- aGUCGCCGGU------------GCuaCUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 72535 0.67 0.946712
Target:  5'- gCAGgGGCCGCagcugggGGUGGcguuccaacgguACCGGCCGCu -3'
miRNA:   3'- aGUCgCCGGUG-------CUACU------------UGGUUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.