miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 72628 0.66 0.965934
Target:  5'- -gAGCGGCCugGccAUcAGCCuguGCCACu -3'
miRNA:   3'- agUCGCCGGugC--UAcUUGGu--UGGUGu -5'
10933 5' -54 NC_002794.1 + 74737 0.7 0.863445
Target:  5'- aUCGGCGGCCAgG--GAACCuggGugCACAu -3'
miRNA:   3'- -AGUCGCCGGUgCuaCUUGG---UugGUGU- -5'
10933 5' -54 NC_002794.1 + 75333 0.68 0.927944
Target:  5'- gCGGUGGCCccCGGgcuGACCAGCCugGu -3'
miRNA:   3'- aGUCGCCGGu-GCUac-UUGGUUGGugU- -5'
10933 5' -54 NC_002794.1 + 75777 0.67 0.942702
Target:  5'- gCGGUGGCgGCGAcGAccguGCCGAgCGCGc -3'
miRNA:   3'- aGUCGCCGgUGCUaCU----UGGUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 75800 0.66 0.971928
Target:  5'- -uGGCGGCCGCGGa-GGCCGA-CGCg -3'
miRNA:   3'- agUCGCCGGUGCUacUUGGUUgGUGu -5'
10933 5' -54 NC_002794.1 + 76074 0.66 0.974622
Target:  5'- -aGGCGGCUcCGGUccGCCGACUugAg -3'
miRNA:   3'- agUCGCCGGuGCUAcuUGGUUGGugU- -5'
10933 5' -54 NC_002794.1 + 76352 0.78 0.442761
Target:  5'- gUCGuCGGCgGCGcgGAGCCGGCCGCGg -3'
miRNA:   3'- -AGUcGCCGgUGCuaCUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 77169 0.69 0.896628
Target:  5'- cCGGCGGCagcgcccaggagcgCAUGAUG-GCCAGCUGCGc -3'
miRNA:   3'- aGUCGCCG--------------GUGCUACuUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 77213 0.67 0.95909
Target:  5'- cUCGGCGGCCAgcuCGuccGUGGGCgCGAcgcCCGCGg -3'
miRNA:   3'- -AGUCGCCGGU---GC---UACUUG-GUU---GGUGU- -5'
10933 5' -54 NC_002794.1 + 79721 0.69 0.904924
Target:  5'- gCGGCGGCgGCGGccaGGGCCugcACCGCc -3'
miRNA:   3'- aGUCGCCGgUGCUa--CUUGGu--UGGUGu -5'
10933 5' -54 NC_002794.1 + 79930 0.66 0.971928
Target:  5'- --cGCGGCgGCGGgccGGCCcGCCGCGu -3'
miRNA:   3'- aguCGCCGgUGCUac-UUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 80270 0.68 0.933102
Target:  5'- gUAGCGGCUGCGGUcGACCcGCuCGCc -3'
miRNA:   3'- aGUCGCCGGUGCUAcUUGGuUG-GUGu -5'
10933 5' -54 NC_002794.1 + 80774 0.67 0.951357
Target:  5'- cUCGGCGGCCGCccgcAGCCGcgcguCCGCGu -3'
miRNA:   3'- -AGUCGCCGGUGcuacUUGGUu----GGUGU- -5'
10933 5' -54 NC_002794.1 + 80925 0.66 0.965934
Target:  5'- gCAGCgucccGGUCACGAUcugguugugGGACC-GCCGCAg -3'
miRNA:   3'- aGUCG-----CCGGUGCUA---------CUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 81028 0.67 0.942702
Target:  5'- cCGGCGGCCGagucggcuCGGaGGACCucccGCCGCu -3'
miRNA:   3'- aGUCGCCGGU--------GCUaCUUGGu---UGGUGu -5'
10933 5' -54 NC_002794.1 + 81134 0.67 0.955337
Target:  5'- gCGGCGGCUcCGGguucgucGAGCCGgcGCCGCc -3'
miRNA:   3'- aGUCGCCGGuGCUa------CUUGGU--UGGUGu -5'
10933 5' -54 NC_002794.1 + 82679 0.68 0.93754
Target:  5'- gCGGCGGUCGCGGaGGcgccuccGCCGccGCCACc -3'
miRNA:   3'- aGUCGCCGGUGCUaCU-------UGGU--UGGUGu -5'
10933 5' -54 NC_002794.1 + 85584 0.7 0.847893
Target:  5'- aCGGCGGCCGCcGUccucGGGCCcgagAGCCGCGg -3'
miRNA:   3'- aGUCGCCGGUGcUA----CUUGG----UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 88881 0.68 0.927944
Target:  5'- gCGGCGGCCggcacgGCGGUGGcggcGCUGGCCGa- -3'
miRNA:   3'- aGUCGCCGG------UGCUACU----UGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 90987 0.67 0.951357
Target:  5'- aCAGCaGGCgCGUGAagcGGGCCGGCCGCGa -3'
miRNA:   3'- aGUCG-CCG-GUGCUa--CUUGGUUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.