miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 92405 0.67 0.942702
Target:  5'- gCuGCGGCUgguUGAUGGA-CAGCCGCAg -3'
miRNA:   3'- aGuCGCCGGu--GCUACUUgGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 94366 0.66 0.969034
Target:  5'- cCGGCGGCCGgucCGAgcGGugCGGCaCACGc -3'
miRNA:   3'- aGUCGCCGGU---GCUa-CUugGUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 100016 0.66 0.971928
Target:  5'- gCGGCGGCCggggagGCGgcGGGCgGGCCGu- -3'
miRNA:   3'- aGUCGCCGG------UGCuaCUUGgUUGGUgu -5'
10933 5' -54 NC_002794.1 + 100093 0.69 0.911035
Target:  5'- gCGGCGGCCGCGAcGGcgGCCGgggcgagaggcGCgGCGg -3'
miRNA:   3'- aGUCGCCGGUGCUaCU--UGGU-----------UGgUGU- -5'
10933 5' -54 NC_002794.1 + 100762 0.72 0.759605
Target:  5'- -gAGCuGGCCGCGGUGc-CCAACCAa- -3'
miRNA:   3'- agUCG-CCGGUGCUACuuGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 101383 0.69 0.911035
Target:  5'- aCGGCGGCgGCGG---ACgCGGCCGCGg -3'
miRNA:   3'- aGUCGCCGgUGCUacuUG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 103354 0.67 0.95495
Target:  5'- -aGGCGGCCAuggcccuggugucCGAggugcgcaUGAAguCCAACCGCGa -3'
miRNA:   3'- agUCGCCGGU-------------GCU--------ACUU--GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 103975 0.79 0.407334
Target:  5'- gCGGCGGCCGCGAcGAGCaguucacGCCGCAg -3'
miRNA:   3'- aGUCGCCGGUGCUaCUUGgu-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 104123 0.7 0.863445
Target:  5'- cUCGGCGGCCAacaaGGUGccGGCgGGCgGCAc -3'
miRNA:   3'- -AGUCGCCGGUg---CUAC--UUGgUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 104167 0.67 0.962621
Target:  5'- uUCAGCGGCaacuCGGUGcucuACCAgACgCGCAu -3'
miRNA:   3'- -AGUCGCCGgu--GCUACu---UGGU-UG-GUGU- -5'
10933 5' -54 NC_002794.1 + 104266 0.68 0.922547
Target:  5'- -gAGUGGCCGCuGGUGcgcgcGGCCGaggGCCACGc -3'
miRNA:   3'- agUCGCCGGUG-CUAC-----UUGGU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 105100 0.66 0.971928
Target:  5'- gUCcGUGGCCAucgcgccgcugcUGGUGGACCugacggucGACCGCGa -3'
miRNA:   3'- -AGuCGCCGGU------------GCUACUUGG--------UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 106150 0.67 0.962621
Target:  5'- aCGGC-GCCGCGGU--GCCGAuCCGCGc -3'
miRNA:   3'- aGUCGcCGGUGCUAcuUGGUU-GGUGU- -5'
10933 5' -54 NC_002794.1 + 106470 0.72 0.787681
Target:  5'- -gAGCGGUCGCGGUGAgguccguggagcGCCGgcGCCAUc -3'
miRNA:   3'- agUCGCCGGUGCUACU------------UGGU--UGGUGu -5'
10933 5' -54 NC_002794.1 + 108479 0.67 0.962621
Target:  5'- -gGGCGG-CGCGGccaGAGCgAGCCGCAu -3'
miRNA:   3'- agUCGCCgGUGCUa--CUUGgUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 109014 0.7 0.878161
Target:  5'- gUCGGCGGCCccgcCGGgauUGggUCuGCCGCGg -3'
miRNA:   3'- -AGUCGCCGGu---GCU---ACuuGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 109135 0.7 0.878161
Target:  5'- ---cCGGCCACcuaGAgccGAGCCGACCGCGa -3'
miRNA:   3'- agucGCCGGUG---CUa--CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 112897 0.68 0.919194
Target:  5'- aCGGCGcGCaCGCGAcgcaggucgcgacgcUGAACCuggcGCCGCAc -3'
miRNA:   3'- aGUCGC-CG-GUGCU---------------ACUUGGu---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 113020 0.66 0.977123
Target:  5'- aCGGCGaG-CGCGAgcgcGAGCgCGACCGCGa -3'
miRNA:   3'- aGUCGC-CgGUGCUa---CUUG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 113314 0.68 0.933102
Target:  5'- gUCAGCGGCCcuccCGccGGcCCAGCCGg- -3'
miRNA:   3'- -AGUCGCCGGu---GCuaCUuGGUUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.