miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 195847 0.66 0.976882
Target:  5'- --cGCGGCCGCGAacacGAaaacgagGCC-GCCGCGg -3'
miRNA:   3'- aguCGCCGGUGCUa---CU-------UGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 194602 0.67 0.955337
Target:  5'- cCGGaGGCCAguGUGcGCCAGCCACc -3'
miRNA:   3'- aGUCgCCGGUgcUACuUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 192501 0.67 0.954167
Target:  5'- -gGGUGGCCgauucugggaaaaaGCGGaacGAGCCGGCCGCc -3'
miRNA:   3'- agUCGCCGG--------------UGCUa--CUUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 189272 0.66 0.974622
Target:  5'- gUCAccGCcGCCaugcucGCGGgccgGAACCAGCCACGc -3'
miRNA:   3'- -AGU--CGcCGG------UGCUa---CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 187736 0.75 0.619124
Target:  5'- gCGGCGGCCuccuCGGUGA-CCGGCgACGg -3'
miRNA:   3'- aGUCGCCGGu---GCUACUuGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 184210 0.74 0.649846
Target:  5'- -gGGCGGCCgACGAcgcGGcccGCCGGCCACAa -3'
miRNA:   3'- agUCGCCGG-UGCUa--CU---UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 183937 0.71 0.823114
Target:  5'- aCGaCGGCCACGGUGAuCgCGAUCGCGg -3'
miRNA:   3'- aGUcGCCGGUGCUACUuG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 180590 0.7 0.87091
Target:  5'- gUCGGCGaGCCGCGcgGcuCCcuCCGCGc -3'
miRNA:   3'- -AGUCGC-CGGUGCuaCuuGGuuGGUGU- -5'
10933 5' -54 NC_002794.1 + 177361 0.67 0.95909
Target:  5'- gCAGUagaGGCCGCGA---ACgCGACCGCGa -3'
miRNA:   3'- aGUCG---CCGGUGCUacuUG-GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 177332 0.7 0.878161
Target:  5'- --cGCGGCCGCGAacgcGAGCaCGAgCACGg -3'
miRNA:   3'- aguCGCCGGUGCUa---CUUG-GUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 177157 0.71 0.809246
Target:  5'- aCGGCGGCgGCGGUccggacgucgGAGCCGacgagccgccccaacGCCACGa -3'
miRNA:   3'- aGUCGCCGgUGCUA----------CUUGGU---------------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 177102 0.68 0.927944
Target:  5'- cCGGCGGCaACGAcucuCUAGCCACGa -3'
miRNA:   3'- aGUCGCCGgUGCUacuuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 176397 0.71 0.805713
Target:  5'- gCGGCGGCgGCGGcgGGACCcGCCGg- -3'
miRNA:   3'- aGUCGCCGgUGCUa-CUUGGuUGGUgu -5'
10933 5' -54 NC_002794.1 + 175693 0.7 0.862686
Target:  5'- -uGGCGGCCccauaccGCGA-GAGCCcGCCGCc -3'
miRNA:   3'- agUCGCCGG-------UGCUaCUUGGuUGGUGu -5'
10933 5' -54 NC_002794.1 + 174877 0.71 0.814496
Target:  5'- gCAGCGGCgGCGGcagcGACCGcggcgGCCACAg -3'
miRNA:   3'- aGUCGCCGgUGCUac--UUGGU-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 173930 0.66 0.974622
Target:  5'- aCGGCGGCgGCGcgGcgcucgucgaaGGCCGucgGCCGCu -3'
miRNA:   3'- aGUCGCCGgUGCuaC-----------UUGGU---UGGUGu -5'
10933 5' -54 NC_002794.1 + 170331 0.71 0.831558
Target:  5'- aCGGa-GCCuCGAUGAGCCGGCCAg- -3'
miRNA:   3'- aGUCgcCGGuGCUACUUGGUUGGUgu -5'
10933 5' -54 NC_002794.1 + 169551 0.68 0.922547
Target:  5'- gUCA-CGGCCggACGAUGAcGCgGACCGCc -3'
miRNA:   3'- -AGUcGCCGG--UGCUACU-UGgUUGGUGu -5'
10933 5' -54 NC_002794.1 + 164806 0.66 0.977123
Target:  5'- gCAGCGG-CACGgcG-GCCAGCuCGCGc -3'
miRNA:   3'- aGUCGCCgGUGCuaCuUGGUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 164469 0.72 0.769089
Target:  5'- gUCGGCGGCCcCGccGcGCCcGCCGCGc -3'
miRNA:   3'- -AGUCGCCGGuGCuaCuUGGuUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.