miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 163963 0.7 0.868693
Target:  5'- cCAGCGGCgcguCGCuGAUGAGcgccgacaggacguCCAGCCGCGc -3'
miRNA:   3'- aGUCGCCG----GUG-CUACUU--------------GGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 163554 0.74 0.67027
Target:  5'- gCGGCGGCCGC-----GCCGGCCGCGg -3'
miRNA:   3'- aGUCGCCGGUGcuacuUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 162917 0.67 0.958358
Target:  5'- cUCGGCGGCCAgggacuugaccuuguCGAcgauccacucgaucuUGAccGCCGACgACAu -3'
miRNA:   3'- -AGUCGCCGGU---------------GCU---------------ACU--UGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 162743 0.67 0.95909
Target:  5'- -gAGCGGCCGCGGgcaGAcgauccACCAgguGCUGCGg -3'
miRNA:   3'- agUCGCCGGUGCUa--CU------UGGU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 162025 0.66 0.969034
Target:  5'- cCGGUgaaGGCCGUGGUGA-CCAGCCgGCAc -3'
miRNA:   3'- aGUCG---CCGGUGCUACUuGGUUGG-UGU- -5'
10933 5' -54 NC_002794.1 + 160415 0.67 0.962621
Target:  5'- cUCAGCuGCCuGCGGcUGAucGCCAGCUGCc -3'
miRNA:   3'- -AGUCGcCGG-UGCU-ACU--UGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 160126 0.67 0.955337
Target:  5'- cCGGCGGCCGCGcgucucacUGGcuguCCAACgACGu -3'
miRNA:   3'- aGUCGCCGGUGCu-------ACUu---GGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 159446 0.66 0.971928
Target:  5'- gUAGCGGCgGCuGAUGAagcggaagACCAGgCGCc -3'
miRNA:   3'- aGUCGCCGgUG-CUACU--------UGGUUgGUGu -5'
10933 5' -54 NC_002794.1 + 159095 0.68 0.938021
Target:  5'- gCGGaCGGCCACccagcUGuAGCCGGCCGCc -3'
miRNA:   3'- aGUC-GCCGGUGcu---AC-UUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 158268 0.76 0.568214
Target:  5'- aUAGCGGUCGCGAUGGA---GCCGCAc -3'
miRNA:   3'- aGUCGCCGGUGCUACUUgguUGGUGU- -5'
10933 5' -54 NC_002794.1 + 157896 0.74 0.67027
Target:  5'- cUCGGCGGCuCGUGGUacGAGCCGAUCGCGg -3'
miRNA:   3'- -AGUCGCCG-GUGCUA--CUUGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 157422 0.66 0.974622
Target:  5'- gCGGCgGGCCGgacUGAgGAGCCGgcgcgGCCGCGg -3'
miRNA:   3'- aGUCG-CCGGU---GCUaCUUGGU-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 156811 0.71 0.831558
Target:  5'- aCGGCGGgcaCCACG-UGAACCAGucgucCCGCGa -3'
miRNA:   3'- aGUCGCC---GGUGCuACUUGGUU-----GGUGU- -5'
10933 5' -54 NC_002794.1 + 155747 0.66 0.969034
Target:  5'- aCGGgGGCgCGCGA-GAGCgGagaGCCACGg -3'
miRNA:   3'- aGUCgCCG-GUGCUaCUUGgU---UGGUGU- -5'
10933 5' -54 NC_002794.1 + 153952 0.77 0.47986
Target:  5'- gCAGCGcGCCACGAgccccucgUGGGCCAGCC-CGa -3'
miRNA:   3'- aGUCGC-CGGUGCU--------ACUUGGUUGGuGU- -5'
10933 5' -54 NC_002794.1 + 153618 0.67 0.947146
Target:  5'- aCGGCGGCgACGAacuccGAGCCcgcuCCGCc -3'
miRNA:   3'- aGUCGCCGgUGCUa----CUUGGuu--GGUGu -5'
10933 5' -54 NC_002794.1 + 153259 0.69 0.898577
Target:  5'- gCGGCGGCCGgGAgcGGGCUcucucgacGACCGCGc -3'
miRNA:   3'- aGUCGCCGGUgCUa-CUUGG--------UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 152819 0.66 0.974622
Target:  5'- aUCGcGCGG-CAgGccGAGCCGGCCACc -3'
miRNA:   3'- -AGU-CGCCgGUgCuaCUUGGUUGGUGu -5'
10933 5' -54 NC_002794.1 + 151302 0.72 0.787681
Target:  5'- gCGGCGGCgcccguugacguCACGcgGGACCgAGCCACc -3'
miRNA:   3'- aGUCGCCG------------GUGCuaCUUGG-UUGGUGu -5'
10933 5' -54 NC_002794.1 + 149807 0.66 0.971928
Target:  5'- -gAGCGGUcguuucacaCACGGUcaGAGCCAucuCCACGg -3'
miRNA:   3'- agUCGCCG---------GUGCUA--CUUGGUu--GGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.