miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10933 5' -54 NC_002794.1 + 149543 0.68 0.927944
Target:  5'- gCGGCGGCgACGGc--GCCGucGCCGCGg -3'
miRNA:   3'- aGUCGCCGgUGCUacuUGGU--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 149078 0.67 0.947146
Target:  5'- cCAGCGGCgGCGgcGAcaaaaGCaCGACaCACAu -3'
miRNA:   3'- aGUCGCCGgUGCuaCU-----UG-GUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 147629 0.66 0.965934
Target:  5'- -aGGCGGCCGCcaucguUCGGCCGCAg -3'
miRNA:   3'- agUCGCCGGUGcuacuuGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 147416 0.74 0.67027
Target:  5'- gCGGCGGCCAUcg-GGACaCAGCCGCc -3'
miRNA:   3'- aGUCGCCGGUGcuaCUUG-GUUGGUGu -5'
10933 5' -54 NC_002794.1 + 147229 0.7 0.83982
Target:  5'- -gAGCGGCCGuCGGggcccgcGAGCC-GCCGCAg -3'
miRNA:   3'- agUCGCCGGU-GCUa------CUUGGuUGGUGU- -5'
10933 5' -54 NC_002794.1 + 147160 0.66 0.977123
Target:  5'- aUCAcGuCGGCCcaguacucgguGCGcgGAuccgACCGGCCGCAa -3'
miRNA:   3'- -AGU-C-GCCGG-----------UGCuaCU----UGGUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 146984 0.77 0.470439
Target:  5'- gUCGGCGGCCA-GGUGGcagGCCAgcguuGCCGCAg -3'
miRNA:   3'- -AGUCGCCGGUgCUACU---UGGU-----UGGUGU- -5'
10933 5' -54 NC_002794.1 + 146840 0.67 0.951357
Target:  5'- gCGGCGGCCGCGgcGucguCCGG-CGCGg -3'
miRNA:   3'- aGUCGCCGGUGCuaCuu--GGUUgGUGU- -5'
10933 5' -54 NC_002794.1 + 146450 0.69 0.891999
Target:  5'- aCGGCGGCCGCGgcGGcGgCGGCCGuCAc -3'
miRNA:   3'- aGUCGCCGGUGCuaCU-UgGUUGGU-GU- -5'
10933 5' -54 NC_002794.1 + 146039 0.67 0.958725
Target:  5'- --cGCGGCCACGucUGAuaggcgaggcgccGCCAuuCCGCGu -3'
miRNA:   3'- aguCGCCGGUGCu-ACU-------------UGGUu-GGUGU- -5'
10933 5' -54 NC_002794.1 + 145507 0.67 0.942702
Target:  5'- cCGGCuccGCCAUGAccgcgGAGCCGGCCgGCAg -3'
miRNA:   3'- aGUCGc--CGGUGCUa----CUUGGUUGG-UGU- -5'
10933 5' -54 NC_002794.1 + 145427 0.77 0.489372
Target:  5'- gCGGUGGCCACGAucUGGcACCcguGCCGCAg -3'
miRNA:   3'- aGUCGCCGGUGCU--ACU-UGGu--UGGUGU- -5'
10933 5' -54 NC_002794.1 + 145221 0.75 0.629366
Target:  5'- cCGGCGGUCGCGaAUGAGCgaaaacauggCGGCCGCGg -3'
miRNA:   3'- aGUCGCCGGUGC-UACUUG----------GUUGGUGU- -5'
10933 5' -54 NC_002794.1 + 141938 0.7 0.847893
Target:  5'- gUCGGCGGCgC-CGccGAACCGagcucgcagccGCCACAg -3'
miRNA:   3'- -AGUCGCCG-GuGCuaCUUGGU-----------UGGUGU- -5'
10933 5' -54 NC_002794.1 + 141375 0.74 0.67027
Target:  5'- -uGGCGGUgGCGGcuuUGAACCAACCgACGu -3'
miRNA:   3'- agUCGCCGgUGCU---ACUUGGUUGG-UGU- -5'
10933 5' -54 NC_002794.1 + 140648 0.7 0.878161
Target:  5'- gCGGCggaGGCCgGCGGUcGAGCCGACgACGa -3'
miRNA:   3'- aGUCG---CCGG-UGCUA-CUUGGUUGgUGU- -5'
10933 5' -54 NC_002794.1 + 139693 0.7 0.878161
Target:  5'- gCAGCGGCCcCGGUGcacguagagcACCgGGCCGCGg -3'
miRNA:   3'- aGUCGCCGGuGCUACu---------UGG-UUGGUGU- -5'
10933 5' -54 NC_002794.1 + 138951 0.66 0.971928
Target:  5'- --cGUGGCCACGGgcgccgGGcuGCCGGCCucGCAc -3'
miRNA:   3'- aguCGCCGGUGCUa-----CU--UGGUUGG--UGU- -5'
10933 5' -54 NC_002794.1 + 138241 0.7 0.847893
Target:  5'- -aGGCGGCCgACGAccuGGCCGACcCGCAg -3'
miRNA:   3'- agUCGCCGG-UGCUac-UUGGUUG-GUGU- -5'
10933 5' -54 NC_002794.1 + 137802 0.66 0.974622
Target:  5'- gUCGGCGGCCccggcgGCGGcgGGACgGGCgGCc -3'
miRNA:   3'- -AGUCGCCGG------UGCUa-CUUGgUUGgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.