Results 41 - 60 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10933 | 5' | -54 | NC_002794.1 | + | 157422 | 0.66 | 0.974622 |
Target: 5'- gCGGCgGGCCGgacUGAgGAGCCGgcgcgGCCGCGg -3' miRNA: 3'- aGUCG-CCGGU---GCUaCUUGGU-----UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 164806 | 0.66 | 0.977123 |
Target: 5'- gCAGCGG-CACGgcG-GCCAGCuCGCGc -3' miRNA: 3'- aGUCGCCgGUGCuaCuUGGUUG-GUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 195847 | 0.66 | 0.976882 |
Target: 5'- --cGCGGCCGCGAacacGAaaacgagGCC-GCCGCGg -3' miRNA: 3'- aguCGCCGGUGCUa---CU-------UGGuUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 147160 | 0.66 | 0.977123 |
Target: 5'- aUCAcGuCGGCCcaguacucgguGCGcgGAuccgACCGGCCGCAa -3' miRNA: 3'- -AGU-C-GCCGG-----------UGCuaCU----UGGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 118894 | 0.66 | 0.977123 |
Target: 5'- cCGGcCGGCC-CGccGAGCuCGACCugGu -3' miRNA: 3'- aGUC-GCCGGuGCuaCUUG-GUUGGugU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 79930 | 0.66 | 0.971928 |
Target: 5'- --cGCGGCgGCGGgccGGCCcGCCGCGu -3' miRNA: 3'- aguCGCCGgUGCUac-UUGGuUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 100016 | 0.66 | 0.971928 |
Target: 5'- gCGGCGGCCggggagGCGgcGGGCgGGCCGu- -3' miRNA: 3'- aGUCGCCGG------UGCuaCUUGgUUGGUgu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 57674 | 0.66 | 0.965934 |
Target: 5'- cUCGGCGGCCAgcCGGU---CCAcguCCACGg -3' miRNA: 3'- -AGUCGCCGGU--GCUAcuuGGUu--GGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 10649 | 0.66 | 0.969034 |
Target: 5'- gCGGCucgcGCCGCGGaGAgucgcGCCGACCGCc -3' miRNA: 3'- aGUCGc---CGGUGCUaCU-----UGGUUGGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 162025 | 0.66 | 0.969034 |
Target: 5'- cCGGUgaaGGCCGUGGUGA-CCAGCCgGCAc -3' miRNA: 3'- aGUCG---CCGGUGCUACUuGGUUGG-UGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 134039 | 0.66 | 0.969034 |
Target: 5'- cCGGCGGCCGCcggcGGCCGGCguCAc -3' miRNA: 3'- aGUCGCCGGUGcuacUUGGUUGguGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 48156 | 0.66 | 0.969034 |
Target: 5'- --uGCGGCgCACG-UGcGCCAguACCGCGg -3' miRNA: 3'- aguCGCCG-GUGCuACuUGGU--UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 13065 | 0.66 | 0.969034 |
Target: 5'- cCAGCgcacGGUCGCGGUcGAcagcucguCCAGCCGCGg -3' miRNA: 3'- aGUCG----CCGGUGCUA-CUu-------GGUUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 45875 | 0.66 | 0.969034 |
Target: 5'- cCGGCGGCCGCuAUcuGCCGcgcuGCUACGa -3' miRNA: 3'- aGUCGCCGGUGcUAcuUGGU----UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 94366 | 0.66 | 0.969034 |
Target: 5'- cCGGCGGCCGgucCGAgcGGugCGGCaCACGc -3' miRNA: 3'- aGUCGCCGGU---GCUa-CUugGUUG-GUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 149807 | 0.66 | 0.971928 |
Target: 5'- -gAGCGGUcguuucacaCACGGUcaGAGCCAucuCCACGg -3' miRNA: 3'- agUCGCCG---------GUGCUA--CUUGGUu--GGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 105100 | 0.66 | 0.971928 |
Target: 5'- gUCcGUGGCCAucgcgccgcugcUGGUGGACCugacggucGACCGCGa -3' miRNA: 3'- -AGuCGCCGGU------------GCUACUUGG--------UUGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 46161 | 0.66 | 0.971928 |
Target: 5'- gCGGgGGCCGCcuggcgGGUGGGCCGccugccucGCUACGg -3' miRNA: 3'- aGUCgCCGGUG------CUACUUGGU--------UGGUGU- -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 75800 | 0.66 | 0.971928 |
Target: 5'- -uGGCGGCCGCGGa-GGCCGA-CGCg -3' miRNA: 3'- agUCGCCGGUGCUacUUGGUUgGUGu -5' |
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10933 | 5' | -54 | NC_002794.1 | + | 138951 | 0.66 | 0.971928 |
Target: 5'- --cGUGGCCACGGgcgccgGGcuGCCGGCCucGCAc -3' miRNA: 3'- aguCGCCGGUGCUa-----CU--UGGUUGG--UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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