miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 3' -54.8 NC_002794.1 + 160315 0.66 0.957061
Target:  5'- gCGAGacccgGCGCUCGCGCgcgCgCGUGgUGGc -3'
miRNA:   3'- aGCUC-----UGCGAGCGUGa--G-GCAUgACUa -5'
10934 3' -54.8 NC_002794.1 + 175243 0.66 0.956308
Target:  5'- uUCGAGAUGCcCG-GCUCCGgcugccucgacgGCUGGUg -3'
miRNA:   3'- -AGCUCUGCGaGCgUGAGGCa-----------UGACUA- -5'
10934 3' -54.8 NC_002794.1 + 165189 0.66 0.953209
Target:  5'- aCGAGGCGauCUCGCACgUCCG-GCgGAc -3'
miRNA:   3'- aGCUCUGC--GAGCGUG-AGGCaUGaCUa -5'
10934 3' -54.8 NC_002794.1 + 173236 0.66 0.953209
Target:  5'- aUCGGGcCGCUCgagGCGCUCgGaccGCUGAUc -3'
miRNA:   3'- -AGCUCuGCGAG---CGUGAGgCa--UGACUA- -5'
10934 3' -54.8 NC_002794.1 + 46186 0.67 0.944825
Target:  5'- -gGGGGCGCgUCGCGCUCg--ACUGGc -3'
miRNA:   3'- agCUCUGCG-AGCGUGAGgcaUGACUa -5'
10934 3' -54.8 NC_002794.1 + 48386 0.67 0.944825
Target:  5'- gCGcGACGaCUCGCugUUCGaGCUGGc -3'
miRNA:   3'- aGCuCUGC-GAGCGugAGGCaUGACUa -5'
10934 3' -54.8 NC_002794.1 + 69703 0.67 0.940286
Target:  5'- cUGGGACGCggucuaCGCGCagaggUCgGUGCUGAa -3'
miRNA:   3'- aGCUCUGCGa-----GCGUG-----AGgCAUGACUa -5'
10934 3' -54.8 NC_002794.1 + 35644 0.67 0.940286
Target:  5'- cCGGGACGCUCGU--UCCGg--UGAUa -3'
miRNA:   3'- aGCUCUGCGAGCGugAGGCaugACUA- -5'
10934 3' -54.8 NC_002794.1 + 74531 0.67 0.940286
Target:  5'- cUCGAGGCGC-CGCGCg----GCUGAg -3'
miRNA:   3'- -AGCUCUGCGaGCGUGaggcaUGACUa -5'
10934 3' -54.8 NC_002794.1 + 72886 0.68 0.912889
Target:  5'- -gGGGugGCUguaCGCGCgccuggugcgggCCGUGCUGAc -3'
miRNA:   3'- agCUCugCGA---GCGUGa-----------GGCAUGACUa -5'
10934 3' -54.8 NC_002794.1 + 73907 0.69 0.867614
Target:  5'- aUCGAG-CGCcuggaGCGCUCCGUGCg--- -3'
miRNA:   3'- -AGCUCuGCGag---CGUGAGGCAUGacua -5'
10934 3' -54.8 NC_002794.1 + 138696 0.69 0.852391
Target:  5'- gCGcaAGGCGCcgcCGCACUUCGUGCUGc- -3'
miRNA:   3'- aGC--UCUGCGa--GCGUGAGGCAUGACua -5'
10934 3' -54.8 NC_002794.1 + 156598 0.69 0.852391
Target:  5'- aCGAG-CGCUCGaGCUUCGcGCUGAc -3'
miRNA:   3'- aGCUCuGCGAGCgUGAGGCaUGACUa -5'
10934 3' -54.8 NC_002794.1 + 184524 0.69 0.852391
Target:  5'- aCGAGACGCagGCGauCUCCGgcgucgcGCUGAg -3'
miRNA:   3'- aGCUCUGCGagCGU--GAGGCa------UGACUa -5'
10934 3' -54.8 NC_002794.1 + 50967 0.7 0.84448
Target:  5'- gCGAGACGCUCGCGC-C---GCUGGg -3'
miRNA:   3'- aGCUCUGCGAGCGUGaGgcaUGACUa -5'
10934 3' -54.8 NC_002794.1 + 48267 0.7 0.836379
Target:  5'- cCGAGGCGCUCGCGgugugcaaUCUGcACUGGc -3'
miRNA:   3'- aGCUCUGCGAGCGUg-------AGGCaUGACUa -5'
10934 3' -54.8 NC_002794.1 + 124738 0.71 0.793271
Target:  5'- -aGAGGCGCUCGUucauCUCCGUcagcggGCUGu- -3'
miRNA:   3'- agCUCUGCGAGCGu---GAGGCA------UGACua -5'
10934 3' -54.8 NC_002794.1 + 126608 0.72 0.727144
Target:  5'- cUGGccCGCUCGCGCUCCGUACg--- -3'
miRNA:   3'- aGCUcuGCGAGCGUGAGGCAUGacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.