miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 46305 0.66 0.980029
Target:  5'- -aGCCGaGU-CCGAACCCGA-GCGg-- -3'
miRNA:   3'- gaUGGC-CAuGGUUUGGGCUgCGCaga -5'
10934 5' -54.3 NC_002794.1 + 103629 0.66 0.980029
Target:  5'- -cGCCGGcgacGCCAAggaGCCCucGGCgGCGUCg -3'
miRNA:   3'- gaUGGCCa---UGGUU---UGGG--CUG-CGCAGa -5'
10934 5' -54.3 NC_002794.1 + 187052 0.66 0.980029
Target:  5'- -cACCaGUACUGccCCCG-CGCGUCg -3'
miRNA:   3'- gaUGGcCAUGGUuuGGGCuGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 152194 0.66 0.980029
Target:  5'- -aGCCGGgcucUCGGGCCCGgGCGCGg-- -3'
miRNA:   3'- gaUGGCCau--GGUUUGGGC-UGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 105082 0.66 0.980029
Target:  5'- gCUGCUGGUG---GACCUGACG-GUCg -3'
miRNA:   3'- -GAUGGCCAUgguUUGGGCUGCgCAGa -5'
10934 5' -54.3 NC_002794.1 + 7942 0.66 0.977799
Target:  5'- -cGCCGGgccccGCCGcgaCCGuCGCGUCa -3'
miRNA:   3'- gaUGGCCa----UGGUuugGGCuGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 136691 0.66 0.97539
Target:  5'- gCUGCUGGcgcagcUGCUGGAcCCCGugGCgGUCg -3'
miRNA:   3'- -GAUGGCC------AUGGUUU-GGGCugCG-CAGa -5'
10934 5' -54.3 NC_002794.1 + 67437 0.66 0.97539
Target:  5'- -gACCGGgaugACCGgguGGCCCG-CGCG-Ca -3'
miRNA:   3'- gaUGGCCa---UGGU---UUGGGCuGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 46203 0.66 0.97539
Target:  5'- -cGCCGaGgagGCCGAGCgggGGCGCGUCg -3'
miRNA:   3'- gaUGGC-Ca--UGGUUUGgg-CUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 69724 0.66 0.97539
Target:  5'- -cGCCGGUuucugGCC-GGCCCucuggGACGCGgUCUa -3'
miRNA:   3'- gaUGGCCA-----UGGuUUGGG-----CUGCGC-AGA- -5'
10934 5' -54.3 NC_002794.1 + 161309 0.66 0.972795
Target:  5'- -gACCGcGUGCUGAcCCCGuuccuCGUGUCg -3'
miRNA:   3'- gaUGGC-CAUGGUUuGGGCu----GCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 67545 0.66 0.972795
Target:  5'- -gACCGuGgcgACCGAGCCCgcccgGACGCGg-- -3'
miRNA:   3'- gaUGGC-Ca--UGGUUUGGG-----CUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 62275 0.66 0.972795
Target:  5'- gUACCGGU-UCAAACgaGAaCGUGUCUg -3'
miRNA:   3'- gAUGGCCAuGGUUUGggCU-GCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 122565 0.66 0.972525
Target:  5'- --cCCGGUcucggaACCGAACCgcgacggCGACGCGUa- -3'
miRNA:   3'- gauGGCCA------UGGUUUGG-------GCUGCGCAga -5'
10934 5' -54.3 NC_002794.1 + 2874 0.66 0.970008
Target:  5'- -gGCgCGGUcGCCcucGCCCGGCGUGUg- -3'
miRNA:   3'- gaUG-GCCA-UGGuu-UGGGCUGCGCAga -5'
10934 5' -54.3 NC_002794.1 + 146781 0.66 0.969719
Target:  5'- ---gCGGUACCAGaagacguACCCGuCGCGcCg -3'
miRNA:   3'- gaugGCCAUGGUU-------UGGGCuGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 64062 0.67 0.968241
Target:  5'- aCUGCCGGgcgACCAcgugacuuGCCCuagaacacggucucGCGCGUCg -3'
miRNA:   3'- -GAUGGCCa--UGGUu-------UGGGc-------------UGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 137845 0.67 0.967023
Target:  5'- -cGCCGGgGCCGccgccggcgAACCCGcCGCGcCg -3'
miRNA:   3'- gaUGGCCaUGGU---------UUGGGCuGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 172525 0.67 0.967023
Target:  5'- ---aCGGUGCCGGuCCCGuCGCGa-- -3'
miRNA:   3'- gaugGCCAUGGUUuGGGCuGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 142095 0.67 0.966713
Target:  5'- gCUGCCGGcgGCgGGacgcccgcgacgcGCCCGGCGgGUUUc -3'
miRNA:   3'- -GAUGGCCa-UGgUU-------------UGGGCUGCgCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.