miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 12194 0.79 0.427745
Target:  5'- -cGCCGGgcCCGAGCgCCGACGgGUCg -3'
miRNA:   3'- gaUGGCCauGGUUUG-GGCUGCgCAGa -5'
10934 5' -54.3 NC_002794.1 + 166111 0.74 0.649697
Target:  5'- -gACCGGgcGCCGAGCCCGcgccgaGCGUCUc -3'
miRNA:   3'- gaUGGCCa-UGGUUUGGGCug----CGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 7565 0.74 0.689819
Target:  5'- -cGCCGcGcGCCGGACCCGGCcCGUCg -3'
miRNA:   3'- gaUGGC-CaUGGUUUGGGCUGcGCAGa -5'
10934 5' -54.3 NC_002794.1 + 180162 0.73 0.71945
Target:  5'- aCUACCGGUGCCAGuucaucuucACCgGACaguaCGUCg -3'
miRNA:   3'- -GAUGGCCAUGGUU---------UGGgCUGc---GCAGa -5'
10934 5' -54.3 NC_002794.1 + 77580 0.73 0.738854
Target:  5'- -cGCCGGcgucggggACCGcGCCgGGCGCGUCg -3'
miRNA:   3'- gaUGGCCa-------UGGUuUGGgCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 2057 0.73 0.738854
Target:  5'- -cGCCGGcGCCcgcucgucuGGCgCCGACGCGUCg -3'
miRNA:   3'- gaUGGCCaUGGu--------UUG-GGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 146282 0.72 0.767261
Target:  5'- -gACCGGUcgACCGGAuCCCGAuCGCGaUCg -3'
miRNA:   3'- gaUGGCCA--UGGUUU-GGGCU-GCGC-AGa -5'
10934 5' -54.3 NC_002794.1 + 109183 0.72 0.784723
Target:  5'- -gACCGGUuggaacgagcgggACCGAGCCCGGuCGCucGUCg -3'
miRNA:   3'- gaUGGCCA-------------UGGUUUGGGCU-GCG--CAGa -5'
10934 5' -54.3 NC_002794.1 + 100821 0.72 0.785629
Target:  5'- -cGCCGGUGgCGGcGCCCGAgGCGUa- -3'
miRNA:   3'- gaUGGCCAUgGUU-UGGGCUgCGCAga -5'
10934 5' -54.3 NC_002794.1 + 131117 0.72 0.803462
Target:  5'- -cACgGGcACCGaagGACCCGACGaCGUCUu -3'
miRNA:   3'- gaUGgCCaUGGU---UUGGGCUGC-GCAGA- -5'
10934 5' -54.3 NC_002794.1 + 114909 0.72 0.803462
Target:  5'- cCUGCCGc-GCCAAGCUCGGguucCGCGUCa -3'
miRNA:   3'- -GAUGGCcaUGGUUUGGGCU----GCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 83859 0.71 0.82069
Target:  5'- cCUGCgCGGUcACCAGucggcgccGCCCGAagGCGUCg -3'
miRNA:   3'- -GAUG-GCCA-UGGUU--------UGGGCUg-CGCAGa -5'
10934 5' -54.3 NC_002794.1 + 135216 0.71 0.82069
Target:  5'- -cGCCGGcggcGCCGGccACCCGGCGCG-Cg -3'
miRNA:   3'- gaUGGCCa---UGGUU--UGGGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 42188 0.71 0.837253
Target:  5'- -cGCCGGUugUgAGGCUCGACGCG-Cg -3'
miRNA:   3'- gaUGGCCAugG-UUUGGGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 56925 0.71 0.837253
Target:  5'- uCUGCCGGUgcGCCcccaCCGugGCGUgCUg -3'
miRNA:   3'- -GAUGGCCA--UGGuuugGGCugCGCA-GA- -5'
10934 5' -54.3 NC_002794.1 + 185219 0.71 0.837253
Target:  5'- -gGCgGGgagcgGCgCGAGCCCGACgaGCGUCUg -3'
miRNA:   3'- gaUGgCCa----UG-GUUUGGGCUG--CGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 159570 0.71 0.845266
Target:  5'- aCUGCgGGUGcacgagcucgccCCGGACCCaGACGcCGUCg -3'
miRNA:   3'- -GAUGgCCAU------------GGUUUGGG-CUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 51805 0.7 0.860722
Target:  5'- -cGCCGucgACUucucGCCCGACGCGUCc -3'
miRNA:   3'- gaUGGCca-UGGuu--UGGGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 179443 0.7 0.868152
Target:  5'- uUGgCGuUACCGGACCCGACGCcgaGUCc -3'
miRNA:   3'- gAUgGCcAUGGUUUGGGCUGCG---CAGa -5'
10934 5' -54.3 NC_002794.1 + 110954 0.7 0.868152
Target:  5'- gCUGCCcaugGGUuCgGAACCCGGCGCGgagCg -3'
miRNA:   3'- -GAUGG----CCAuGgUUUGGGCUGCGCa--Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.