Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10934 | 5' | -54.3 | NC_002794.1 | + | 88346 | 0.7 | 0.882387 |
Target: 5'- gUGCCGGUcgacGCCGAcGgCCGGCGCGg-- -3' miRNA: 3'- gAUGGCCA----UGGUU-UgGGCUGCGCaga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 99130 | 0.7 | 0.882387 |
Target: 5'- -aGCCGGcgacgACCG---CCGGCGCGUCUc -3' miRNA: 3'- gaUGGCCa----UGGUuugGGCUGCGCAGA- -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 177478 | 0.7 | 0.882387 |
Target: 5'- aCUcCCGGcgcgaUGCCGAGCCaaaCGACGgGUCUg -3' miRNA: 3'- -GAuGGCC-----AUGGUUUGG---GCUGCgCAGA- -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 69270 | 0.69 | 0.89576 |
Target: 5'- uUACCGGgacugagcGCCGAGgCCGGCGCcgacGUCg -3' miRNA: 3'- gAUGGCCa-------UGGUUUgGGCUGCG----CAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 148981 | 0.69 | 0.89576 |
Target: 5'- gCUGCCGGU-CCuGGCCaacCGCGUCg -3' miRNA: 3'- -GAUGGCCAuGGuUUGGgcuGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 19250 | 0.69 | 0.902113 |
Target: 5'- -gGCCGGcacgGCCAucCUCGugGCGUUc -3' miRNA: 3'- gaUGGCCa---UGGUuuGGGCugCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 126452 | 0.69 | 0.907636 |
Target: 5'- -gGCCaGGcGCCGAGCCgCGACaggcagaGCGUCUg -3' miRNA: 3'- gaUGG-CCaUGGUUUGG-GCUG-------CGCAGA- -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 128027 | 0.69 | 0.908239 |
Target: 5'- -gACCGGcccGCCGucGCCCGgcgccgccGCGCGUCa -3' miRNA: 3'- gaUGGCCa--UGGUu-UGGGC--------UGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 64575 | 0.69 | 0.919802 |
Target: 5'- -cGCCGGcGCCGucgcuccgccGCCCGugGuCGUCa -3' miRNA: 3'- gaUGGCCaUGGUu---------UGGGCugC-GCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 73176 | 0.69 | 0.919802 |
Target: 5'- gUGCCGGUcgcGCCAGcGCCgGGCGaCGUUc -3' miRNA: 3'- gAUGGCCA---UGGUU-UGGgCUGC-GCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 3433 | 0.69 | 0.919802 |
Target: 5'- -gACgGGU-CCGcGgCCGGCGCGUCg -3' miRNA: 3'- gaUGgCCAuGGUuUgGGCUGCGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 133567 | 0.69 | 0.919802 |
Target: 5'- gCUGCCGcu-CCGAGCCCG-CGCG-Ca -3' miRNA: 3'- -GAUGGCcauGGUUUGGGCuGCGCaGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 2495 | 0.68 | 0.925237 |
Target: 5'- -aGCCGGUGCCAcgGGCCgCGcuccuCGcCGUCg -3' miRNA: 3'- gaUGGCCAUGGU--UUGG-GCu----GC-GCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 173671 | 0.68 | 0.925237 |
Target: 5'- -gGCCGG-ACUcacGAACCCGAuCGCGaUCa -3' miRNA: 3'- gaUGGCCaUGG---UUUGGGCU-GCGC-AGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 151441 | 0.68 | 0.930439 |
Target: 5'- -gGCCGGcGCCGAGCggcucgacgacaCCGGCGCGcCc -3' miRNA: 3'- gaUGGCCaUGGUUUG------------GGCUGCGCaGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 178283 | 0.68 | 0.930439 |
Target: 5'- -aACCGc-ACCGGACCCGACGCc--- -3' miRNA: 3'- gaUGGCcaUGGUUUGGGCUGCGcaga -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 78948 | 0.68 | 0.935409 |
Target: 5'- -gGCCGGU-CCGgcgucGGCuCCGGCGuCGUCg -3' miRNA: 3'- gaUGGCCAuGGU-----UUG-GGCUGC-GCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 74459 | 0.68 | 0.940148 |
Target: 5'- -gGCCGGcGCCgGGACCgCGAC-CGUCg -3' miRNA: 3'- gaUGGCCaUGG-UUUGG-GCUGcGCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 113407 | 0.68 | 0.940148 |
Target: 5'- -gGCaCGGUcgGCCcGACCuCGACGcCGUCg -3' miRNA: 3'- gaUG-GCCA--UGGuUUGG-GCUGC-GCAGa -5' |
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10934 | 5' | -54.3 | NC_002794.1 | + | 176313 | 0.68 | 0.944656 |
Target: 5'- -cGCCGGUGUCGGACCCGGacUGCuUCg -3' miRNA: 3'- gaUGGCCAUGGUUUGGGCU--GCGcAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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