miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 183664 0.67 0.963503
Target:  5'- -gGCCGGgcGCCGcucggacGugCCGGCgGCGUCg -3'
miRNA:   3'- gaUGGCCa-UGGU-------UugGGCUG-CGCAGa -5'
10934 5' -54.3 NC_002794.1 + 13823 0.67 0.960435
Target:  5'- -cGCCGGcgACCAGACCagguccuGCGCGUa- -3'
miRNA:   3'- gaUGGCCa-UGGUUUGGgc-----UGCGCAga -5'
10934 5' -54.3 NC_002794.1 + 183402 0.67 0.960435
Target:  5'- -cGCCucacGUACCu-GCCCGACGacCGUCUg -3'
miRNA:   3'- gaUGGc---CAUGGuuUGGGCUGC--GCAGA- -5'
10934 5' -54.3 NC_002794.1 + 57955 0.67 0.956822
Target:  5'- ---aCGGUACaCAGGucCCCGugGCGUUc -3'
miRNA:   3'- gaugGCCAUG-GUUU--GGGCugCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 113186 0.67 0.956822
Target:  5'- -cGCCGGcggaucgcacGCCGuucGCCCGGCGCGcCg -3'
miRNA:   3'- gaUGGCCa---------UGGUu--UGGGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 50041 0.67 0.956822
Target:  5'- -cGCCGGcGgCGAGCCgaGCGCGUCg -3'
miRNA:   3'- gaUGGCCaUgGUUUGGgcUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 182947 0.67 0.956822
Target:  5'- -gGCCGaGUACC--GCCUGGC-CGUCg -3'
miRNA:   3'- gaUGGC-CAUGGuuUGGGCUGcGCAGa -5'
10934 5' -54.3 NC_002794.1 + 115834 0.67 0.956822
Target:  5'- -gGCCGGggagACCAcucgccgacaGugCCGGCGCGa-- -3'
miRNA:   3'- gaUGGCCa---UGGU----------UugGGCUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 81209 0.67 0.956822
Target:  5'- gCUGCCGGUGCUGuuCgCGcGCGCGcCg -3'
miRNA:   3'- -GAUGGCCAUGGUuuGgGC-UGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 176606 0.67 0.948936
Target:  5'- gUGCCGaccgGCCGcGGCCCccguGGCGCGUCUc -3'
miRNA:   3'- gAUGGCca--UGGU-UUGGG----CUGCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 58485 0.67 0.948936
Target:  5'- -aGCCGGg--CGAGCgCCGACGCGg-- -3'
miRNA:   3'- gaUGGCCaugGUUUG-GGCUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 150145 0.67 0.948936
Target:  5'- aUugUGGU-CCAAcaGCCCGG-GCGUCUc -3'
miRNA:   3'- gAugGCCAuGGUU--UGGGCUgCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 162721 0.68 0.944656
Target:  5'- -cACCaGGUGCUgcgGGACCCGAcCGUGUUc -3'
miRNA:   3'- gaUGG-CCAUGG---UUUGGGCU-GCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 176313 0.68 0.944656
Target:  5'- -cGCCGGUGUCGGACCCGGacUGCuUCg -3'
miRNA:   3'- gaUGGCCAUGGUUUGGGCU--GCGcAGa -5'
10934 5' -54.3 NC_002794.1 + 74459 0.68 0.940148
Target:  5'- -gGCCGGcGCCgGGACCgCGAC-CGUCg -3'
miRNA:   3'- gaUGGCCaUGG-UUUGG-GCUGcGCAGa -5'
10934 5' -54.3 NC_002794.1 + 113407 0.68 0.940148
Target:  5'- -gGCaCGGUcgGCCcGACCuCGACGcCGUCg -3'
miRNA:   3'- gaUG-GCCA--UGGuUUGG-GCUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 78948 0.68 0.935409
Target:  5'- -gGCCGGU-CCGgcgucGGCuCCGGCGuCGUCg -3'
miRNA:   3'- gaUGGCCAuGGU-----UUG-GGCUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 151441 0.68 0.930439
Target:  5'- -gGCCGGcGCCGAGCggcucgacgacaCCGGCGCGcCc -3'
miRNA:   3'- gaUGGCCaUGGUUUG------------GGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 178283 0.68 0.930439
Target:  5'- -aACCGc-ACCGGACCCGACGCc--- -3'
miRNA:   3'- gaUGGCcaUGGUUUGGGCUGCGcaga -5'
10934 5' -54.3 NC_002794.1 + 2495 0.68 0.925237
Target:  5'- -aGCCGGUGCCAcgGGCCgCGcuccuCGcCGUCg -3'
miRNA:   3'- gaUGGCCAUGGU--UUGG-GCu----GC-GCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.