miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10934 5' -54.3 NC_002794.1 + 173671 0.68 0.925237
Target:  5'- -gGCCGG-ACUcacGAACCCGAuCGCGaUCa -3'
miRNA:   3'- gaUGGCCaUGG---UUUGGGCU-GCGC-AGa -5'
10934 5' -54.3 NC_002794.1 + 64575 0.69 0.919802
Target:  5'- -cGCCGGcGCCGucgcuccgccGCCCGugGuCGUCa -3'
miRNA:   3'- gaUGGCCaUGGUu---------UGGGCugC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 73176 0.69 0.919802
Target:  5'- gUGCCGGUcgcGCCAGcGCCgGGCGaCGUUc -3'
miRNA:   3'- gAUGGCCA---UGGUU-UGGgCUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 3433 0.69 0.919802
Target:  5'- -gACgGGU-CCGcGgCCGGCGCGUCg -3'
miRNA:   3'- gaUGgCCAuGGUuUgGGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 133567 0.69 0.919802
Target:  5'- gCUGCCGcu-CCGAGCCCG-CGCG-Ca -3'
miRNA:   3'- -GAUGGCcauGGUUUGGGCuGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 128027 0.69 0.908239
Target:  5'- -gACCGGcccGCCGucGCCCGgcgccgccGCGCGUCa -3'
miRNA:   3'- gaUGGCCa--UGGUu-UGGGC--------UGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 126452 0.69 0.907636
Target:  5'- -gGCCaGGcGCCGAGCCgCGACaggcagaGCGUCUg -3'
miRNA:   3'- gaUGG-CCaUGGUUUGG-GCUG-------CGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 19250 0.69 0.902113
Target:  5'- -gGCCGGcacgGCCAucCUCGugGCGUUc -3'
miRNA:   3'- gaUGGCCa---UGGUuuGGGCugCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 148981 0.69 0.89576
Target:  5'- gCUGCCGGU-CCuGGCCaacCGCGUCg -3'
miRNA:   3'- -GAUGGCCAuGGuUUGGgcuGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 69270 0.69 0.89576
Target:  5'- uUACCGGgacugagcGCCGAGgCCGGCGCcgacGUCg -3'
miRNA:   3'- gAUGGCCa-------UGGUUUgGGCUGCG----CAGa -5'
10934 5' -54.3 NC_002794.1 + 88346 0.7 0.882387
Target:  5'- gUGCCGGUcgacGCCGAcGgCCGGCGCGg-- -3'
miRNA:   3'- gAUGGCCA----UGGUU-UgGGCUGCGCaga -5'
10934 5' -54.3 NC_002794.1 + 177478 0.7 0.882387
Target:  5'- aCUcCCGGcgcgaUGCCGAGCCaaaCGACGgGUCUg -3'
miRNA:   3'- -GAuGGCC-----AUGGUUUGG---GCUGCgCAGA- -5'
10934 5' -54.3 NC_002794.1 + 99130 0.7 0.882387
Target:  5'- -aGCCGGcgacgACCG---CCGGCGCGUCUc -3'
miRNA:   3'- gaUGGCCa----UGGUuugGGCUGCGCAGA- -5'
10934 5' -54.3 NC_002794.1 + 110954 0.7 0.868152
Target:  5'- gCUGCCcaugGGUuCgGAACCCGGCGCGgagCg -3'
miRNA:   3'- -GAUGG----CCAuGgUUUGGGCUGCGCa--Ga -5'
10934 5' -54.3 NC_002794.1 + 179443 0.7 0.868152
Target:  5'- uUGgCGuUACCGGACCCGACGCcgaGUCc -3'
miRNA:   3'- gAUgGCcAUGGUUUGGGCUGCG---CAGa -5'
10934 5' -54.3 NC_002794.1 + 51805 0.7 0.860722
Target:  5'- -cGCCGucgACUucucGCCCGACGCGUCc -3'
miRNA:   3'- gaUGGCca-UGGuu--UGGGCUGCGCAGa -5'
10934 5' -54.3 NC_002794.1 + 159570 0.71 0.845266
Target:  5'- aCUGCgGGUGcacgagcucgccCCGGACCCaGACGcCGUCg -3'
miRNA:   3'- -GAUGgCCAU------------GGUUUGGG-CUGC-GCAGa -5'
10934 5' -54.3 NC_002794.1 + 56925 0.71 0.837253
Target:  5'- uCUGCCGGUgcGCCcccaCCGugGCGUgCUg -3'
miRNA:   3'- -GAUGGCCA--UGGuuugGGCugCGCA-GA- -5'
10934 5' -54.3 NC_002794.1 + 42188 0.71 0.837253
Target:  5'- -cGCCGGUugUgAGGCUCGACGCG-Cg -3'
miRNA:   3'- gaUGGCCAugG-UUUGGGCUGCGCaGa -5'
10934 5' -54.3 NC_002794.1 + 185219 0.71 0.837253
Target:  5'- -gGCgGGgagcgGCgCGAGCCCGACgaGCGUCUg -3'
miRNA:   3'- gaUGgCCa----UG-GUUUGGGCUG--CGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.